KEGG   Glycomyces sp. TRM65418: K3N28_19015
Entry
K3N28_19015       CDS       T07425                                 
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
gly  Glycomyces sp. TRM65418
Pathway
gly03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:gly00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    K3N28_19015 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gly03400]
    K3N28_19015 (ligD)
Enzymes [BR:gly01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     K3N28_19015 (ligD)
DNA repair and recombination proteins [BR:gly03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     K3N28_19015 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_primase_S
Other DBs
NCBI-ProteinID: QZD54796
UniProt: A0A8G1MZT4
LinkDB
Position
complement(4151141..4152049)
AA seq 302 aa
MAAETMQVGGHDIKVSNLDKELFPEGHVSKGDMLDHYRAVADAMLPHLAGRPLTLRRYPD
GIGEAGFFQKHASDYFPDWVRVVDMPQVDEGSVNHVVCDDEATLLYLANQATIEFHVWLS
TVDEPDHPDRLVVDIDPPDGVPVSTLRDVARRARDLYADVGLTPFVQATGGRGFHVVAPL
DRSADFDAVRDLADAMADRLAAADPDRLTTAQRKNRRGDRIFLDVNRNAYGQTFIAPYSL
RARAGAPVATPLDWAELGRAEPNGHSSTSIRKRLAQKTDPWADIDDHAASAAEARERLDA
LR
NT seq 909 nt   +upstreamnt  +downstreamnt
atggcggcggagaccatgcaggtcggcggccacgacatcaaagtgtccaacctcgacaag
gaactctttcccgaggggcatgtgagcaagggcgacatgctcgaccactaccgggcggtc
gccgacgcgatgctcccgcacctggccgggcggccgctgacgctgcgccgctacccggac
ggcatcggagaggccggcttcttccagaagcacgcctcggactacttccccgactgggtc
cgcgtggtcgacatgccccaggtcgacgagggctcggtcaaccacgtcgtctgcgacgac
gaggccaccctgctctacctcgccaaccaggccaccatcgagttccacgtctggctctcc
actgtggacgaaccggaccaccccgaccgtctcgtcgtcgacatcgacccgcctgacggc
gtcccggtctcgacgctgcgggacgtcgcccgccgggcgcgcgacctctacgccgacgtc
ggcctgacgccgttcgtgcaggccacgggcgggcgcggcttccacgtcgtcgcgccgctg
gaccgctccgccgacttcgacgccgtccgcgacctcgccgacgccatggcggaccgcctc
gccgcggccgaccccgaccgcctgacgaccgcgcagcgcaagaaccgccgcggcgaccgg
atcttcctggacgtcaaccggaacgcctacggccagacgttcatcgccccgtactcgctg
cgcgcccgggcgggcgcgccggtggcgacgccgctggactgggccgaactcggccgggcc
gagccgaacggccactcgagcacctccatccgcaaacgcctggcgcagaagaccgacccg
tgggccgacatcgacgaccacgccgcctcggcggccgaggcgcgggaacgcctggacgcc
ctgcgttag

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