Glarea lozoyensis: GLAREA_02519
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Entry
GLAREA_02519 CDS
T04883
Name
(RefSeq) RNA-binding, RBD
KO
K14328
regulator of nonsense transcripts 3
Organism
glz
Glarea lozoyensis
Pathway
glz03013
Nucleocytoplasmic transport
glz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
glz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
GLAREA_02519
03015 mRNA surveillance pathway
GLAREA_02519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
glz03019
]
GLAREA_02519
Messenger RNA biogenesis [BR:
glz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
GLAREA_02519
mRNA cycle factors
P-body specific factors
GLAREA_02519
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
19461576
NCBI-ProteinID:
XP_008085796
UniProt:
S3D3F8
LinkDB
All DBs
Position
Unknown
AA seq
594 aa
AA seq
DB search
MAASSAANSSRPQANGVLPVAGSQTAGNSSKANGPKPPAPKLKVIVRRLPPGLTEAEFIS
VLGNDWKLGQGKVDYYVYKPGKDSKDPSKPSRPSRAYFHLTNENYLMTLSELVRQSVFED
AQNTFNNPCLIGPPSVEFAPYNRVPGGRRRVDARAGTIDQDSEFMSFLEGLANPTTTKDT
GADPAAEGVSGKPEKVTTTPLVQYLKDKKANKHKEAAVKAAKKQEALLAKGKASKDATAS
SEDAKRKGKEVKGDRAVERAAKEAVKILNREASAKGAEPPKKAEGSSSTTPTHPKLDLGR
VPGRQRGSVVAAHIRMLQRDLGLSPAQAHRQVRRDTADAQKAERAAATAKPAVETKEAPS
PAQSPIVPTAPKAIVTQQSNRRSRVKPPITTDDGKAPSSTPTPSTPVSSPITLLKKPEPA
PTSSVPTIQSVKSAPAQNSPRRGQSSTGPSDGATQAFIKHANPSQGVTEPLLKEAMEKFG
AVSMVEIDKRKGFAYVDFIESSSLRKAMAANPIAVAQGTVQVMQRKGTSLPPEKKVVHNQ
PQTQQVPHPPTRGGRGGRGGTIGRRGGRGGGTPRGGGMNSPQAPISAPTAPAAK
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atggccgcatcttcggcggcaaacagcagtcggccacaggcaaatggagtcctccctgtt
gcgggatcacagacggctggcaattcctcaaaagcaaatggccccaagcctcctgctcct
aaattgaaggttattgtccgtagactgcccccaggactgactgaggctgagtttatttcc
gtgctcggaaacgactggaaattagggcaagggaaggttgattattacgtctacaagcct
gggaaggactcgaaagacccctccaaaccctcgcgaccctcgcgcgcgtacttccatctc
acgaatgagaactatctcatgacattgtcggaactcgttcgacaatccgtctttgaggat
gcacaaaatacttttaataacccttgccttatcggcccaccgagtgtcgaatttgctccg
tataatcgagttcctggaggccggcgtcgtgtagatgcccgcgccggtaccattgaccag
gattcagagttcatgtctttcctggagggactggccaatccaactaccacgaaggatacc
ggggccgatcctgcggctgagggagtgtctggcaaaccagagaaagttactacaacaccg
ctggtgcaatacttgaaagacaagaaagcgaacaagcacaaggaggcggccgtgaaagcg
gccaagaaacaggaagccttgttggcgaaggggaaagctagtaaggacgcgactgcttcc
agcgaggatgccaaaaggaaaggaaaggaggtcaagggtgatagagcagtagaacgggca
gcgaaagaagcagtgaagatactgaatcgggaagcctcagctaagggggcagagccacca
aagaaagccgaaggctcatcctccactactccaactcaccccaagcttgaccttggcaga
gttccaggccgtcaacgaggatctgttgttgctgcccatattcgaatgttgcaacgtgac
cttggacttagtccggctcaagctcaccgtcaagttagacgggatactgctgatgcccag
aaagcagagagagctgcggctacagccaaaccagctgtcgagacgaaagaagcaccatct
cctgctcaatcacccattgtaccaaccgcgccaaaggccattgtaacgcagcagtcaaac
agaagatcacgtgtgaagccacccataacaaccgatgatggcaaagcgccctcgtctacc
cctacgccttctactcctgtctcttcgcctattactttgttgaagaagcccgaaccagca
cccacctcctctgtacctactattcaatcagtaaagtcggcaccagctcagaattctccc
agaagaggacaatctagcacgggtccttccgacggtgccacccaagcgtttatcaagcac
gctaatccatctcagggcgttactgaaccattgttgaaggaggcaatggagaagtttggc
gctgtttccatggttgagattgacaagagaaagggttttgcttatgttgacttcattgaa
tcatctagtttgcgcaaagctatggcggcaaatcctattgcggttgcccagggtactgta
caagtcatgcaaaggaaaggtacttctctgcctcctgagaagaaagttgtgcataatcag
ccacaaactcagcaagttccccatccacctactcgcggtggtcgtggaggaaggggcggg
acaattggacgaaggggtggtcgtggcgggggaacaccccgtggaggaggcatgaattct
cctcaagcaccaatatcagcaccaactgcaccagctgcgaagtga
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