Glarea lozoyensis: GLAREA_03855
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Entry
GLAREA_03855 CDS
T04883
Name
(RefSeq) Cysteine-rich
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
glz
Glarea lozoyensis
Pathway
glz03022
Basal transcription factors
glz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
glz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
GLAREA_03855
09124 Replication and repair
03420 Nucleotide excision repair
GLAREA_03855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
glz03021
]
GLAREA_03855
03400 DNA repair and recombination proteins [BR:
glz03400
]
GLAREA_03855
Transcription machinery [BR:
glz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
GLAREA_03855
DNA repair and recombination proteins [BR:
glz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
GLAREA_03855
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Tfb4
Motif
Other DBs
NCBI-GeneID:
19462910
NCBI-ProteinID:
XP_008082299
UniProt:
S3DWY8
LinkDB
All DBs
Position
Unknown
AA seq
513 aa
AA seq
DB search
MSRIRSLVRPRGINRHSDTVHHIMSSSDEDYVADDSDDDRNAQTATGTHGTRSTGPVRDA
TNGRGVRGGDGKEKGKKQAAWEKINRSWDIVIEGADGSINSAVDGLIRQNKRKRLLRDTT
PLQRGIIRHLILIIDLSFAMVEKDLRPTRYILTLRTATEFVTEYFEQNPISQLGIIGMRD
GIAIRISDISGNPTEHIERLRALGDQQGQGNPSLQNALEMSRAALFHAPSHGTREVLIIY
GALLSSDPGDIHDTIESLITDRIRVSIVGLAAQVAICAELCEKTNAGDKNNYHVALDEEH
FKALVMATTTPPVTQTKQQSQSSLLQMGFPSRTLGVGKTMSFCACHSKLSRGGYLCSRCD
SKVCSLPAECPACGLTLILSTHLARSYHHLFPLKNWVEVPWSAASVSKECYSCLAPFPPM
SSAPSQSSNKAKTSRENGEKDKLDSENIAANDSERYACEVCNNHFCIDCDVFAHTISHNC
PGCQSDTRGLIENDSVDRNRGHGTIVADVEMAG
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgcattcgcagccttgtccgccctcgaggtatcaaccgccactcagacactgtc
caccacatcatgtctagctccgatgaggactacgttgcggacgattcagacgatgacaga
aatgcccaaacggctaccggtactcacgggaccagaagcactggacctgtaagagatgct
actaatggcagaggggttcgaggtggggatggcaaggaaaagggaaagaagcaagctgcc
tgggagaagattaataggagttgggacatagtaatagagggcgctgacgggagcatcaac
tctgctgttgacggtcttatcaggcagaacaagaggaagcgacttttgagggatacaaca
ccgctacaaagaggaattataagacatctaattctgattattgatttatcgtttgcgatg
gtagagaaggacctgcggcctacgagatacatcttgacgctacgaaccgccaccgaattt
gtcacagaatactttgagcagaatcctatttcacagctaggcattattgggatgagagat
ggaattgctattcgaatcagtgatataagcggaaaccctacggaacacattgaacggttg
agagctctgggagatcaacagggccaggggaacccaagtttacagaatgcccttgaaatg
agtagagccgcgctgttccacgctccctctcatggcacaagagaagtgcttataatatac
ggtgctttactatccagcgaccccggggatatccatgacacaatagagagcttgattacg
gatcggatacgagtatctatcgttggattagctgcgcaagttgccatctgtgcagaacta
tgcgaaaagacaaacgcaggcgacaaaaataattatcatgtggcactggacgaggaacat
tttaaagcactggtaatggctaccaccacgccaccagttactcaaaccaaacagcaatct
cagtcgtctctacttcaaatggggttcccgtcgcggaccttgggagttggcaagaccatg
agcttctgtgcctgtcatagcaaattgagtagaggcggctacctgtgttcacgttgtgac
agtaaggtatgcagtcttcccgctgagtgtcctgcttgtggcctcaccctgatcctctct
acccatcttgcccgctcttatcaccatctcttccctctcaaaaattgggtggaggtacct
tggtccgcggcaagcgtatcgaaagagtgctactcgtgtctcgctccatttcctcctatg
tcctctgctccttctcagtcttcgaacaaggcgaaaacaagtcgggaaaatggcgaaaag
gataaactggacagcgagaatatagctgcgaatgatagtgaaagatacgcttgtgaggtt
tgcaataatcatttctgcattgattgcgatgtttttgcccatacgatctctcataattgt
cctgggtgtcaaagtgatacccggggcttgatagagaatgatagcgtcgacagaaataga
gggcatggtacgattgttgctgatgttgaaatggctggatga
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