Geobacter metallireducens: Gmet_3547
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Entry
Gmet_3547 CDS
T00295
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gme
Geobacter metallireducens
Pathway
gme03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Gmet_3547 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gme03400
]
Gmet_3547 (mfd)
Enzymes [BR:
gme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Gmet_3547 (mfd)
DNA repair and recombination proteins [BR:
gme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Gmet_3547 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
RecG_dom3_C
Oxidored_nitro
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABB33752
UniProt:
Q39PS2
LinkDB
All DBs
Position
3979334..3982810
Genome browser
AA seq
1158 aa
AA seq
DB search
MPLVDSQLIDRITGHLAPKTGRVTLTGLKGSAPAYLLAQLLKTAERPLLVIAPDADRAAE
ICTELRFFSGRPFDVLSFPAWDVAPFEKGSPHADVTGQRLACLRRLMDRKTAAVVTTPDA
LRQRVLPRTMLDNASLYFLPGEESNRDEFLAKLVTLGYLNVPLVEDRGTFAVRGGIVDIF
PPGFEQPVRIEFFGDFVETIRAFDPLSQRSLAPLEELLLLPSREMVLTDEVLKSASHHIK
ARCDELEISPVARRELLEQLQQGLYPTGVEWLLPLFHPRLETLFDYAGDAVRVVLDPEAL
AEEDERFDRELVTAEDQARERGDLFASPAEFFLTASETAGSIEAGRLVTIPYLTVTGESD
EKTALALDIQENTDLKVDVSSDSERILKPLVTRLNGWLEERQRVIVACHQRGQAQRLYEL
LSHYPLPLNISDRPFPAERERDDGKVDVVIGDLSRGFRLPEEKLIVIAEEEIFGRRQKRR
GVSELRKKQIMTSLAELKPGDYMVHLDHGIGIYRGLQHISLSGCAGDFILLEYAGGDKLY
LPVDRLNLVQRYVGAEGLEPRVDKLGGTSWEKAKGKARAAVQEMAGELLQIYAARQLHEG
HAFSPPDDLYREFEASFAYEETSDQMSAIMDVIGDMTSAKPMDRLVCGDVGYGKTEVAMR
GAFKAVMDGKQVAVLVPTTVLAQQHLETFKARLGAYPVTVEMLSRFRTPKEQKEILEKVK
KGAIDVIIGTHRLLQSDVTFKDLGLLIVDEEQRFGVTHKEKLKKYKAVVDILTLTATPIP
RTLYMSMMGIRDLSIIDTPPVDRLAVKTFVARSSDDLIREAVMRELRRGGQIFFVHNRVQ
SIMNWAEHLRRIVPEAKIAVGHGQMDEGELEKVMLGFMHGETNLLLCTTIIESGLDIPNA
NTLIIDRADTFGLAQLYQLRGRVGRSKQRAYAYLLIPGEGAISSDARERLKIIQELTELG
AGFRLATHDLEIRGAGDILGAKQSGNIAAVGFDLYTELLEEAIQNLKGEERLERVEPEIN
LRIPAFVPEDYVREPNQRLIIYKKLTQAESEEEVDEVMAELVDRFGKLPLAATYLLEVMK
LRIHFKRFLITMAEFDGRRLCLSFHQKTPVPPDTIIGLIRSNPKRYQFSPDFRLTAELAD
TSFEGVLEEARNLLKRLG
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgcccctcgtagacagccagctcatcgaccggatcaccggccacctcgccccaaaaacc
ggccgggtcaccctcaccggtctcaaaggatcggccccggcctatctcctggcccagctt
ctgaaaacggcggagcgccccctcctcgtcatcgcccccgacgccgacagggccgccgag
atctgcaccgagcttcgcttcttcagcgggcgccccttcgacgtcctctcctttcccgcc
tgggacgtggcccccttcgaaaagggatcgccccacgccgacgtgaccggccagcggctc
gcctgcctccgccgcctcatggaccgcaagacggccgccgtggtgaccacaccggacgcc
ctcaggcagcgggtgctccccaggacgatgctggacaacgcctccctctacttcctcccc
ggcgaggaaagcaaccgggatgaatttctcgcaaaactcgtcaccctgggctacctgaat
gtccccctggtggaagaccggggaaccttcgccgtaaggggagggatcgtggacatattc
ccccccggtttcgaacagccggtgcggatcgagttcttcggcgacttcgtggagaccatc
cgggccttcgatcccctatcccagcgctccctggctcccctggaagagctccttctcctc
ccctcccgggagatggtcctgaccgatgaagtgctgaagtccgcctctcaccacatcaag
gcccgctgcgacgagctggaaatatcccccgtggcccggcgagaacttctggagcagcta
cagcaaggcctctatcccaccggcgtagagtggctcctccctctcttccacccccggttg
gagaccctcttcgactatgccggcgacgcagtccgggtggtgttggacccggaagccctg
gccgaagaggacgaacgtttcgaccgcgaactggtaacggccgaggaccaggcccgggaa
cggggagacctcttcgcgtcaccggcggaattcttcctgacagcttcggaaaccgccggc
agcatcgaagcgggacggctcgtgaccatcccctacctgaccgtaaccggggagagcgac
gaaaaaacagccctcgccctggacatccaggaaaacaccgacctcaaggtggatgtctcc
tccgacagcgagcggatcctgaagcctctggtgacaaggctcaacggctggctggaggaa
cggcagcgggtgatcgtcgcctgccaccagcggggccaggcccagcgcctctacgagctc
ctctcccactaccccctccccctgaacatctccgaccgccccttccccgccgagcgggag
cgggacgacggcaaggtggacgttgtaatcggcgacctttcacgggggttccggctcccc
gaagagaagctcattgttatcgccgaagaggagatcttcggccgccgccagaagcggcgc
ggggtctcggagctgcgcaagaagcagatcatgacgtcgctggccgagctgaagcccggc
gactacatggtccacctggaccacggcatcggcatctaccggggactgcaacacatttcc
ctgagcggctgcgccggggacttcatcctcctggagtacgcggggggagacaagctctac
ctccccgtggaccggctgaacctggtccagcgctacgtgggggccgaggggctcgaaccc
cgggtggacaagctgggggggacctcctgggaaaaggccaaggggaaggcccgggccgcc
gtccaggagatggccggagaactgctccagatctacgctgcccgccagctccacgaaggg
catgccttctccccccccgacgacctctaccgggagtttgaggcctccttcgcctacgag
gagacctcggaccagatgtcggccatcatggatgtgatcggcgacatgacgagcgcgaag
cccatggaccgccttgtctgcggcgacgtcggctacggcaagaccgaggtggccatgcgg
ggggctttcaaggcggtcatggacgggaaacaggtggcggtgctggtccccaccacggtc
ctggcccagcagcacctggaaaccttcaaggcccgtctcggcgcctacccggtcaccgta
gagatgctctcccgcttccgcacgcccaaggagcagaaggaaatccttgagaaggtgaag
aaaggggccatcgacgtcatcatcggtacccatcgcctgctccagagcgacgtgaccttc
aaggacctggggctcctcatcgtggacgaggagcagcgcttcggcgtcacccacaaggaa
aaactcaagaaatacaaggcggtggtggatatcctgaccctcaccgccaccccgatcccc
cggaccctctacatgtccatgatggggatccgggatctctccatcatcgacaccccgccc
gtggaccggctggcggtgaagaccttcgtggcccgctcctccgacgaccttatccgggag
gcggtcatgcgggagctgcgccggggggggcagatcttcttcgtccacaaccgggtccag
tccatcatgaactgggccgagcacctgcgccgcatcgtccccgaggcgaagatcgccgtg
gggcacggccagatggacgaaggggaactggagaaggtgatgctcggcttcatgcacggg
gagaccaatctcctgctctgcacgaccataatcgagtcggggctcgacatccccaacgcc
aacaccctcatcatcgaccgggcggacaccttcggcctggcccagctctaccagcttcgg
ggtcgcgtcgggcgctccaagcagcgggcctacgcctacctgctgatccccggcgaaggg
gccatctcgtccgatgcccgtgaacggctgaagattattcaggaactgacggaactcggc
gccggtttccggctcgccacccatgatctcgaaatccgcggcgccggcgacatcctcggg
gccaagcagtcggggaacatagccgccgttggctttgacctctacacggagctcctggag
gaggcgatccagaacctgaagggtgaggaacggctggagcgggtggagccggagatcaac
ctccgcatccccgccttcgttcccgaggattacgtccgggagccgaaccagcggcttatc
atctacaagaagctcacccaggccgaaagcgaggaagaagtggacgaagtcatggcggaa
ctggtggaccgcttcggcaagcttcccctggccgccacgtacctcctggaagtgatgaag
ctgcggattcacttcaagcgcttcctgatcaccatggcggaattcgacggcaggcgcctc
tgcctcagcttccaccagaagacgccggtccctccggataccatcatcggactcatccgt
tcaaacccgaagcgataccagttctcaccggacttccggcttacggcggagcttgccgac
acctccttcgagggggtcctggaagaggccagaaatctcttgaaaaggcttgggtga
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integrated database retrieval system
