Gordonia mangrovi: NWF22_23300
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Entry
NWF22_23300 CDS
T08472
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
gmg
Gordonia mangrovi
Pathway
gmg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NWF22_23300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gmg03400
]
NWF22_23300
Enzymes [BR:
gmg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NWF22_23300
DNA repair and recombination proteins [BR:
gmg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NWF22_23300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
PhoH
PapC_C
Motif
Other DBs
NCBI-ProteinID:
UVF80918
LinkDB
All DBs
Position
complement(5131177..5134551)
Genome browser
AA seq
1124 aa
AA seq
DB search
MSDIDRRHGGAPVPFDITAPLPAGTTVLEASAGTGKTYAIVGLGARLIAEGVPIDKLLLV
TFSRAATAELRERMRERVVELIAALSVPADCHDHDDPLVRHLADGEPSAVTIRRERLVRA
LSDFDASTIATTHTFCNRMLDALGFLGEREMVYEIVEDVDDLVDEAALDLYLRGYAGADR
PEFSLGDATDIARDAVRQPATALAPSQDDLGGADTPDAVVAARRVRFAARIREIVEERKR
TSRLRTYDDLQMILYRIVTDPVVGAAACERIRTMFDAVLVDEFQDTDPQQWEIVRRCFHG
SRRLVLVGDPKQSIYGFRGAEVLSYLQAVRSADSRCVLDVNRRSDGALVDALARLHGGAE
LGHPDIVVHDVTAARAGSRLHGIAPVRLRALPRREFTTVNRSGFPAVGAVRAKVIADVAA
DIAGLLASQTTIEVDGTTRSVEPGDIAILVTLNKTIAPLQEHLQAHGVAAVIGSGTSVFH
TAAARQWLAVIRAVEQPARTDLVRSAALGPLIGWDVDRLAADDGTDTTELATTLQHLGHV
FAEGGFAAMAQRLMGRMQVAERVLAGPDGERDLTDLIQVASLCNIEVMHSDCGLSGLVEW
LADRIADPTRWQRHQDQTRRLDRDTQAVQIMTVHRSKGLQFPIVYVPFAWDGARNSNRAT
FTFHDAQADRVLDVGGTDAPGRRQRWQRHESEAAGEELRLLYVALTRAQSQVVIWWGPAY
HTRNSAVHRLLFGRTPGSPVVPETFDVPDDDTCGRVLMGYRTDGVISVEVAGRDGDSRVD
SPVATRAPTALSAARFDRSIDQSWRRTSYSAIVAAAGHGHAVLESGSESDADLIADEPAE
PGDAPAPAAPQPAGVASLMNGMPFGAAFGTLVHEVLEYVDTDMPDMTAHVAELCGRSVQQ
RMLDVDVERLTAALVGVLTTPLGFGDLWSVGPRDRLAEMEFEFPLADSVATDSAAVRSAV
TGPAVTTAAIADLMDRHLSADDPLAGYSAQLREMPPQRLRGYLTGSIDSVLRTPDGRFVI
VDYKTNRLRPGDLSAEDFDRVSMAAEMAAANYPLQALLYSVALHRYLRWRLPGYRAADHL
GPVQYHFVRGMVGPQTPPGCGVFEWAVPAAMVEDLSDLLAEGDR
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacatcgatcgccggcacggcggtgcgcccgtgccgttcgacatcaccgccccg
ttgcccgccggcacgaccgtgctagaggcgagtgcgggcaccggcaagacctacgcgatc
gtcggtctcggtgctcggctgatcgcggagggggtgccgatcgacaagctgctgttggtc
accttcagccgcgccgccaccgccgaattgcgcgagcgaatgcgcgaacgcgtagtggaa
ctgattgcggcgctgtcggtcccggcggactgtcacgatcatgacgacccgctggtgcgg
catctggcggacggtgagccgagtgcggtgaccatccgccgcgagcggctcgtgcgtgcc
ctgtcggacttcgacgcctccacgatcgcgaccacccacaccttctgcaaccgtatgctg
gatgcgctcggttttctcggcgaacgcgagatggtctacgagatcgtcgaggacgtcgac
gatctggtcgacgaggccgcactcgacctctacctgcggggctacgcgggtgccgatcga
ccggagttctcgctgggcgacgcgaccgacatcgcccgtgatgcggtccggcagcccgcc
accgcgctcgcaccgtcgcaggacgatctcggcggggccgacacacccgatgcggtcgtg
gcggcgcgccgggtacgttttgccgcccggatccgcgagatcgtcgaggagcgcaagcgg
acctcgcgcctgcgcacctacgacgacctgcagatgatcctctaccggatcgtcaccgat
ccggtcgtgggggcggcggcctgcgaacggattcgaacgatgttcgacgccgtgctcgtc
gacgagttccaggacaccgacccgcagcagtgggagatcgtccggcggtgcttccacggc
agtcggaggttggtgctggtcggtgaccccaagcagtcgatctacgggttccgtggtgcc
gaggtgctcagctacctgcaggcggtccggtctgccgactcgcggtgtgtactcgacgtc
aaccggcgctccgacggtgcgctggtggacgccctggcccggttacacggcggcgccgag
ctcggacaccccgacatcgtggtgcacgatgtcaccgccgcccgggccggcagccgactc
cacgggattgcgccggttcggttgcgcgcgttgccgcgtcgggagttcaccaccgtcaac
cggagcggtttcccggcagtcggggcggtccgcgccaaggtcatcgccgacgtcgcggcc
gacatcgccggcctgctggcgtcgcagacgacgatcgaggtggacggcacgacacgctcg
gtggaacccggggacatcgccatcctggtgacactgaacaagaccatcgcaccattgcag
gagcatctgcaggcccatggcgtcgcggcggtgatcggctcgggcaccagcgtgttccac
accgcggcggcccggcagtggctggcggtcatccgcgcggtcgaacagccggcgcgcacc
gatctggtgcgctcggccgcgctcggaccgctgatcggctgggacgtcgaccggttggcc
gccgacgacggcaccgacaccaccgaactggcgaccaccctgcagcacctcggacacgtc
ttcgccgagggcggcttcgcggcgatggcgcagcggttgatgggtcgcatgcaggtggcc
gagcgggtcctcgccgggccggacggcgaacgcgatctgaccgatctcatccaggtggcc
tcgctgtgcaacatcgaggtcatgcacagcgactgcgggctgagcgggctggtcgaatgg
ctcgccgaccgcatcgccgacccgacccggtggcaacggcatcaggatcagacgcggcga
ctcgaccgcgacacgcaggcggtgcagatcatgaccgtgcaccgcagcaaggggttgcag
ttcccgatcgtctacgtgccgttcgcctgggatggcgcgcgcaactccaaccgggccacc
ttcaccttccacgatgcccaggccgaccgggtgctggatgtcggcgggaccgacgcgccg
ggccggcggcagcggtggcagcgccacgagagcgaggcggccggggaggagttgcggctg
ctctacgtcgcgctgacccgagcccagtcgcaggtggtgatctggtggggaccggcctac
cacacccgcaactccgcagtgcatcgtctgctgttcggtcggacccctggatcgccggtg
gtgcccgagaccttcgacgtccccgacgacgacacctgcgggcgggtgctgatgggctat
cgcaccgacggcgtcatcagcgtggaggtagccggccgcgacggcgacagccgggtcgat
tcgcccgtcgcgacacgtgcgccgaccgctctgtcggccgcccgattcgaccggagcatc
gatcagagttggcggcgcacctcgtattcggcgattgtcgcggccgccgggcacggccat
gccgtgctggaatccgggagtgagtccgacgcggacctgatcgccgacgaacccgccgaa
ccgggtgacgcgccggcaccggccgctccgcagccggccggtgtcgcatcgctgatgaac
ggcatgccgttcggtgcggccttcggcaccctggtgcatgaggtactcgagtatgtcgac
accgacatgccggatatgaccgcacatgtcgccgagttgtgcggtcggtcggtgcaacaa
cggatgctcgacgtcgacgtcgagcgcctcaccgctgcgctggtcggtgtgctgaccacc
ccgctcgggttcggtgacctgtggtcggtgggcccgcgggaccgcctggcggagatggag
ttcgagttcccgctggccgacagtgtggcgacggactcggcggcggtgcgctctgcggtg
acgggcccggcggtgaccacggccgccatcgccgacctgatggaccggcacctgtccgcc
gacgacccgctcgccggctacagcgcacaactgcgcgagatgccgccccaacggttacgc
ggttacctcaccggcagtatcgattcggtgctgcgcacgcccgacggacggttcgtgatc
gtcgactacaagaccaatcgtctccggcccggcgatctcagtgccgaggacttcgatcgc
gtatcgatggcagccgagatggccgcagccaactatccgctgcaggcactgctgtattca
gttgcgctgcacaggtacctacgttggcggctacccggataccgcgccgccgaccatctc
ggcccggtgcagtaccacttcgtccgcggcatggtgggaccacagacgccgcccggttgc
ggagtgttcgaatgggcggtgcccgccgcgatggtggaggatctgtccgatctgctggcg
gagggagaccggtga
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