Glutamicibacter mishrai: NMP99_04700
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Entry
NMP99_04700 CDS
T08378
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gmi
Glutamicibacter mishrai
Pathway
gmi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NMP99_04700 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gmi03400
]
NMP99_04700 (mfd)
Enzymes [BR:
gmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NMP99_04700 (mfd)
DNA repair and recombination proteins [BR:
gmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NMP99_04700 (mfd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UTT40591
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All DBs
Position
964968..968579
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AA seq
1203 aa
AA seq
DB search
MSLNGLHDFLREESSFRRIRTSAANSFSTRSEELEIAAPQGMRAILSAHISQSLDESKNE
GVTLIVTATGREAEEVSSSLSAYLPAERIAEFPSWETLPHERLSPRSDTVGRRLEVLRRL
HQRDDSLSVVIAPIRAVLQPLVAGLGELRPVALELDAEPGFDQVIKDLAAAAYARVDMVT
HRGEFAVRGGIIDVFPPTLDHPVRIDFFGDQIDSMRYFAIADQRSTDDAGPQKIIATPCR
EMLITPQVMSRAANLKNQFPAAQEMLTKIAGGIAVEGMESLAPLLVDKMVPLLSLLPESS
IALVMEPERVRARAQDLNATNAEFLAAAWASASDGATAPLDLNTATSERKLATGDFASLA
ETLEHAKAAKVSWWALTAMGADEELDLGASTIRIPAREPHGYQGDIEAMMEFIAGRVKDQ
WRFVVATEGPGPAQRLSELFAEFSIPAHRVDNIDQEPTPGLIEITQATAGRGFVFEDLKL
GLLTEADLLGRSSAYPNRKGRKLTVKRKRNAVDPLSLQAGDFIVHEQHGIGKFVELMARK
VNGSGKDAKREYLVVEYASSKRGAPGDRLFVPMDQLHMVTRYVGGEAPTLSKMGGSDWAS
TKSKARKAVKEIAGDLIKLYSARMASRGHAFGQDTPWQNELEEAFAFIETPDQLTAINEV
KSDMEKEIPMDRLISGDVGFGKTEIAVRAAFKAVQDSRQVAVLVPTTLLASQHYQTFTER
YSGFPVRVKTLSRFQTAKESKEIMAGLKDGSVDIVIGTHRLLSKNVEFKNLGLVIIDEEQ
RFGVEHKEELKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATPPEERHPVLTYVGP
RSDKQISAAIKRELMRDGQVFFVHNRVSSIERVAAELRELVPEARVEVAHGKMSESRLER
IIQDFWEKKFDVLVSTTIIETGLDISNANTLIVDRANNYGLSQLHQLRGRVGRGRERAYA
YFLWDVEKPLGEVALERLKAVAAHNELGSGYQLAMKDLELRGAGNLLGGEQSGHIAGVGF
DLYLRLVGEAVADYKGEGEEEATEMKIDLPVNAHLPHDYVPGERLRLEAYRNIASAETNE
ALAEVREELVDRYGKLPQPVENLMRVAALRIRARAVGLHDIQQIGNNIKLSPAKIEDLPA
SRQVRLERLYPGAANKPALNSIFLPKPKTSPIGGRDLADEEILEWAEKLLYAIFEPTPAT
AAK
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaacggacttcatgacttcctgcgcgaggagtcatccttccgccgcatccgc
acgagtgcagccaacagcttctccacgcgaagcgaagaactggaaatcgcggccccgcag
ggcatgcgcgcaatcctctcggcgcatatcagccagtccctggacgagagcaagaatgag
ggtgtgacgctgatcgtcaccgccaccggacgcgaggcggaagaggtttccagctcgctg
agcgcctacctgccagcagagcggattgccgagttcccttcgtgggaaaccctgccgcat
gaacgcctctcgccacgcagcgataccgtcggccgccgactcgaagtcttgcgccggctt
caccagcgcgatgacagcctcagcgtcgtcatcgcaccgatacgcgccgtcctccagccg
ctggtggccggcctgggcgaattgcgtccggtggccctggagctggatgccgaaccaggc
ttcgaccaggtcatcaaggacctggccgccgcggcctacgcccgcgtggatatggtcacc
catcgcggcgaattcgctgtgcgcggtggcatcatcgacgtgttcccgccgacgctcgac
cacccggtacgcattgatttcttcggtgatcagatcgattccatgcgctacttcgccatc
gcagaccagcgctccaccgatgacgccggaccgcagaaaatcattgccactccctgccgt
gaaatgctgatcaccccgcaggtcatgagccgggcggcgaacctgaaaaaccaattccct
gcagcccaggaaatgctcaccaaaattgccggcggcatcgcagtggaaggcatggagtcc
ctcgcgccactgctggtcgacaagatggttcccctgctctcgctgttgccagagtcctcc
atcgccctggtgatggagcctgaacgcgttcgcgcccgcgcccaggatctgaacgctacc
aacgccgagtttctggccgccgcctgggcttcggcctccgacggagccaccgctccgctg
gacctgaacaccgcgacctccgagcgcaagctcgccaccggcgacttcgcctcattggcc
gaaaccctggagcatgccaaggcagccaaggtctcctggtgggcgctgaccgccatgggc
gcggatgaagaactggatcttggtgcttcgaccatccgcatcccggcgcgcgaaccccac
ggctaccagggcgatatcgaagcgatgatggaattcatcgccggacgagtcaaggaccaa
tggcgttttgtcgttgctaccgaaggccctggcccggcccagcggctctctgaactcttc
gcggaattcagcatccccgcgcatcgcgtcgacaacatcgaccaggagccaacgccgggg
ctgatcgaaatcacccaggccacggccgggcgtggtttcgtctttgaagacctcaagctc
ggcttgctcaccgaagccgacctgctgggccgctccagcgcgtaccccaaccgcaagggc
cgcaagctcacggtcaagcgcaagcgcaacgcggttgatccactgagcctgcaggcaggg
gacttcatcgtccacgagcagcacggcatcggcaaattcgtggagctgatggcccgcaag
gtcaacggctcgggcaaggacgccaagcgcgaataccttgtggtggaatacgcctcatcc
aagcgcggagcgccgggggaccggctcttcgtcccgatggatcagctgcacatggtcacg
cggtacgtgggcggcgaagcccccaccctgtccaagatgggcggctcggattgggccagc
accaaatccaaggcccgaaaagcggtcaaggaaatcgcaggggacctgatcaagctgtac
tcagcacgcatggccagccgcggccacgcgttcggccaggacactccgtggcagaacgag
ctggaagaagccttcgcgttcattgaaactccagatcagctcaccgcgatcaatgaggtg
aagtccgatatggagaaggaaatcccgatggaccggttgatttccggcgacgtgggcttc
ggcaagaccgaaattgccgtgcgcgctgccttcaaggcggtgcaggattcccggcaggtg
gccgtgctggtgcccacaaccttgctggcttcccagcactaccagaccttcaccgaacgc
tactccggcttcccggtccgcgtgaaaaccctgtcgcgtttccagaccgccaaggaatca
aaggaaatcatggccgggctgaaggacggcagcgtggatatcgtcatcggcacccaccgc
ctgctgtccaagaatgtcgagttcaagaacctgggcctggtcattatcgacgaggaacag
cgcttcggtgtcgagcacaaggaagaactcaagaagatgcgcaccaacgtggatgtgctg
gccatgagcgccaccccgattccgcgtaccttggaaatgtcattgaccggcattcgcgaa
acctccaccctggcaacaccgccagaagaacgccacccggtgctgacctatgtgggtccg
cgcagcgataagcagatctccgcagctatcaagcgcgaactcatgcgtgacgggcaggtg
ttcttcgtgcacaaccgcgtgagctccatcgagcgcgtggccgcggaactgcgtgaactt
gttccggaagcccgcgtggaagtcgcgcacggcaagatgagcgaatcacggctggaacgg
atcatccaggacttctgggaaaagaagttcgacgtcctggtctccacaacgatcatcgaa
accggtctggacatctccaatgccaatacgctgattgtggaccgggccaacaactatggc
ctctcccagctgcaccagctgcgcggacgcgtaggccgcgggcgtgaacgcgcctacgcc
tacttcctctgggacgtggaaaagccgctgggcgaggtcgccctggagcgcctgaaggca
gtcgccgcgcacaacgaactgggctcgggctaccagctggcgatgaaggacctggaactg
cgcggggcgggcaacctgctcggcggcgaacagtcaggccacattgccggcgtgggcttc
gacctctacctgcgcctcgtgggcgaagccgtggccgactacaagggcgaaggcgaagaa
gaagccaccgagatgaaaatcgacctgccggtcaacgcccatctgccacatgattatgtc
cccggcgagcggctgcgcctggaggcctaccgcaatattgcctcggcggaaaccaacgag
gcgctcgccgaagtgcgcgaggagcttgtggaccgctatggcaagctgccgcagccggtg
gaaaacctgatgagggttgccgctttgcgtatccgcgcccgcgctgtggggctgcacgat
atccagcagatcggcaacaacatcaagctgtcgccggccaagatcgaggacctgccagcc
tcgcgccaggtgcgcctggaacgcctctacccaggggccgcgaacaagccggcattgaat
tcgatattcctgcccaagcccaagacctcgcctattggcggacgggatctggcggacgaa
gagatcctcgagtgggctgaaaagctgctctacgcgatcttcgaacctaccccggccact
gctgccaaatag
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