Gloeobacter morelensis: ISF26_15620
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Entry
ISF26_15620 CDS
T07869
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gml
Gloeobacter morelensis
Pathway
gml03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ISF26_15620 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gml03400
]
ISF26_15620 (mfd)
Enzymes [BR:
gml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ISF26_15620 (mfd)
DNA repair and recombination proteins [BR:
gml03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ISF26_15620 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UFP93228
LinkDB
All DBs
Position
complement(3254931..3258395)
Genome browser
AA seq
1154 aa
AA seq
DB search
MPLTALVQSLKGSPFLEEMAQRLGKALPVRLQGGNRVARGLAASALARRQGTPLLVITAN
LEEAARWSAQLEAMGWGSVYLYPSSEATPYEPFDPEEEVTWGQLQVLAELTGRISAHWAI
VCTSRALHPHLPPPEYLAEYCLSLEAGAGLSIEKLTGELVRLGYLRVPQVEAEGQFSRRG
DILDFFPVSAEIPVRAEWFGDELERLREFDPATQRSLDAVEQVAITPVGFGPVVLPELQL
RLTPARVAALPDSWQEVVRTQIQQGQAPEGLRRWLGLAFDQPASLVSYLPDALTVCVDEP
EQVRSSEYRWCEQAEEQWCHQPVGPGPLHTDFAAIEASLGRYARIEMRELATEGEAFGLG
GRPLPSVPHQFGNLAEHLRQYRTQGLQIWMLSAQPSRAVALLGDHDCPAQFIPNPQDLPA
IEKARSTRTPIALKYSGLAEMEGSILATLRVVLVTDREFFGQRVLATPNFVRKRRRAASK
QIDLDKLNPGDFVVHRNHGIGRFAKLEKLTVSGSAREYLVIEYADGILRVAADQMNSLSR
YRSTGGTVQLSRMGSKSWEKTKQKVKKAIQKIAFDLLDLYARRAQESRIPFPPDQPWQRE
MEESFPYPLTPDQARAIQEVKIDMESERPMDRLVCGDVGFGKTEVAIRAAFKALTSGVQC
AVLVPTTVLASQHYHTFKERFAPYPISIGLLNRFRTASEKKDLLARLATGELDLVIGTHQ
LLGAGVRFQNLGLLIIDEEQRFGVAQKEKIKTLKTQVDVLTLTATPIPRTLYMSLSGVRE
MSLITTPPPSRRPIKTHLAPYDPEHVRTAILQELGRGGQIFYVYNRIEDIQDVAARLQAM
IPTARVGVGHGQMEEGELESTMLAFSGGEYDILVCTTIIESGLDIPRVNTILVENAHQFG
LSQLYQLRGRVGRSGVQAHAWMFYKQEDGLTDEARKRLRAIQEFTQLGSGYQLAMRDMEI
RGVGNLLGAEQSGQLNAIGFDLYMELLEEAIQEIRGRKLPKVEATQIDLRVTAFIPADYI
PDLEQKMRAYRQVAAAPDRTQLQATALEWTERYGPVPPAAQQLLRVMELKQVARALGFAR
IRPEGTNIVLETPMEAPAWEQIHQALPAEVRGRFFFQPGKVTVRNLGTLPSAQQLENLVQ
WLDKVQLPSLEMAG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgccgctcaccgccctcgtccagagtctcaagggttctccgtttcttgaggagatggcc
caacgcctcggcaaagccctgcctgtccggctgcagggtggcaaccgggtcgcccgcggc
cttgccgcctcggcactggcccgccgccagggcacgccacttttggtgatcaccgccaat
cttgaggaagcggcgcgctggagcgctcagctcgaagcgatgggttggggttcggtgtac
ctgtatccgtcctcagaagcgaccccctacgaacctttcgatccggaagaagaagtcacc
tggggacaactgcaggtgctcgccgagctgaccggacgcatcagcgcccactgggcgatc
gtctgcaccagccgggcgctgcatccccacctgccgccgccggagtacctggcggaatat
tgcctgtcgctggaggcgggtgcgggtctgtcgattgagaagttgaccggcgaactggtc
cggctgggctatttgcgggtgccacaggtcgaggcggagggccaattctcccgccgcggc
gacattctggacttctttccggtttctgccgagatacccgtgcgcgccgagtggttcggc
gacgagttggagcgcctgcgcgaatttgacccggccacccagcgctcgctcgatgcggtg
gagcaggtggcgattaccccagtgggcttcgggccggtggtactgccggagctgcagttg
cgcctcaccccggcgcgggtggccgcgttacccgatagctggcaagaagtcgtgcgcacc
cagatccagcagggtcaggctcccgaggggctgcgccgctggctggggctggcgtttgac
caaccggcctcgctggtgagctatctgccggacgcgctgactgtctgtgtcgatgaaccc
gagcaggtgcgctcctccgagtaccgctggtgcgagcaggccgaggagcagtggtgccac
cagccggtgggaccggggccgctacacaccgattttgcggcgatcgaagcgtccctcggg
cgctacgcgcgcatcgagatgcgcgaactggccaccgagggtgaggcgttcggtctgggc
ggccggccgctgccgagtgtgccccaccagttcggcaacctggcggaacacctgcggcag
taccgcacccaggggctacaaatctggatgctctcggcccagccgagccgggcagtggcc
ctgttgggcgatcacgactgccccgcccagttcatccccaacccgcaggatctgcctgcc
atcgaaaaggcgcgctccacccgcacgcccattgccctcaagtactcgggccttgccgag
atggaggggagcatccttgccaccctgcgcgtcgtgctggtcaccgatcgcgaatttttt
ggacagcgggtgctcgccacacccaacttcgtgcgcaagcgccgccgggccgcctccaag
caaatcgacctcgacaagctcaaccctggcgattttgttgtccaccgcaaccatgggatt
ggtcgcttcgcgaagcttgaaaagctgaccgtgagcggctcggcgcgcgagtacctggtc
atcgagtacgccgacggcatcctgcgggtggcggccgaccagatgaattcgctctcgcgc
tatcgctccaccggcgggacggtgcagctttcgcgcatggggagcaagagctgggagaag
accaagcaaaaagtcaaaaaagcgatccagaaaattgccttcgacctgctcgatctctat
gcccgccgcgcccaggaaagccgcattccctttccgcccgaccagccctggcagcgggag
atggaagagtcttttccctatccgctcaccccggatcaagcccgcgccatccaggaagtg
aaaatcgacatggagtcagaacggcccatggaccgactggtctgcggcgatgtcggcttc
ggcaaaaccgaggtggcgatccgtgccgccttcaaagccctcacctcaggtgtccagtgc
gccgtgctggtccccaccacggtgctcgcctcgcagcactaccacacatttaaagagcgc
ttcgccccctacccgatttcgatcggcctgctcaaccgctttcgcaccgcgagcgagaaa
aaagacctgctcgcccgcctcgccaccggcgaactggacttggtgatcggcacccaccag
ctgttgggcgccggggtgcgcttccagaatcttgggctattgattatcgacgaggagcag
cgcttcggcgtcgcccaaaaagaaaaaatcaagaccctcaagacccaggtggacgtgctc
accctcacggccactcccatcccccgcacgctctacatgtcgctttctggggtgcgcgag
atgagcctgattaccaccccgcccccgagccgccgcccgattaagacccacctggctccc
tacgaccccgagcacgtgcgcacggcgatcttgcaggagttaggccggggtggccagatt
ttttatgtctacaaccgcatcgaagatatccaggatgtcgccgcccgtctgcaggcgatg
atccccaccgcccgcgtcggcgtcggccacggccagatggaggagggcgaactcgaatcg
acgatgcttgcgtttagcggcggcgagtacgacattctcgtgtgcacgacgatcatcgaa
tcgggcctcgatattccccgcgtcaacacgatcctggtcgagaacgctcaccagttcggt
ctttcccagctctaccagttgcgcggccgggtgggccgctcgggggtacaggcccacgcc
tggatgttctacaagcaggaggacggcctcaccgacgaggcgcgcaagcgcctgcgggct
attcaagaatttacgcagctgggctcgggctaccagctcgccatgcgcgacatggaaatc
cgcggcgtcggcaacttgctgggtgccgagcagtcgggtcagctcaacgccatcggcttc
gatctgtacatggaactgctcgaagaggcgatccaagaaatccgcggccgcaaactgccc
aaagtcgaagccacccagatcgacctgcgcgtcaccgcctttatcccggccgactacatc
ccggatctcgaacagaagatgcgcgcctaccgccaggtggccgctgcccccgaccgcacc
cagctgcaggccaccgccctcgagtggaccgagcgctacggtccggtcccacccgctgcc
cagcagctcctgcgcgtcatggaactgaagcaggtggcccgcgccctgggctttgcccgc
atccgccccgaaggcaccaacattgtgctggagacccccatggaggcccccgcctgggag
cagatccaccaggcgctgccggcggaggtgcgcggacgctttttcttccagcccggcaaa
gtcaccgtgcgcaacctgggcaccctccccagcgcccagcaactcgaaaatttggtgcag
tggctcgacaaggtacagttgccatcgctggagatggcgggataa
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