Gimesia maris: GmarT_39670
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Entry
GmarT_39670 CDS
T06180
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gmr
Gimesia maris
Pathway
gmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GmarT_39670 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmr03019
]
GmarT_39670 (deaD)
03009 Ribosome biogenesis [BR:
gmr03009
]
GmarT_39670 (deaD)
Enzymes [BR:
gmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GmarT_39670 (deaD)
Messenger RNA biogenesis [BR:
gmr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GmarT_39670 (deaD)
Ribosome biogenesis [BR:
gmr03009
]
Prokaryotic type
rRNA helicases
GmarT_39670 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
P-loop_SecA
AAA_30
CHASE3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QEG18082
LinkDB
All DBs
Position
5208030..5209850
Genome browser
AA seq
606 aa
AA seq
DB search
MLTDVSSQAKFTDLELCQPILDVLVELGYDTPTPIQAQTIPHLLEGRDLVGQAQTGTGKT
AAFALPLLSKIDLELRAPQVLVLAPTRELAIQVGESFKEYGSQLKGLQVLPIYGGADFKG
QLQPLKRGVHVVVGTPGRVMDHMRRGTLKLDNLRCLVLDEADEMLRMGFIDDVEWILEQT
PDNHQTALFSATMPEAIRRIAGNYLKSPQEITVKDKTRTADTIRQRYWLAKGHHKLDALT
RILEAEETDGVIIFVRTKSITTELSEKLEARGFLAAPLNGDIPQKQRERTVGRLKAGHVN
IVIATDVAARGLDVDRISHVINYDLPGDSEAYVHRIGRTGRAGRTGEAIMFVSPREQRSL
SGIERAIKLKIERMELPSINQINKRRTERFKESVTKAMDSPDFEQFQKLLSEFKTESERS
EIDIAAALACMFQGKRPLFLKETPQQRETSHRETPQRQRDSSGKPQFQSERRFSREKEFK
NKEFTKDKEKVFTPRRERATSETPEEGMERFRVQVGRSHGVKPGNIVGAIANEANLDSQY
IGRIDIFDEYSTVDLPEGMPRDIFRALKNVWVSGQQLRISRLDQTESGAPKRKRFKSKGK
PRQQKA
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgttaacggatgtctcttcgcaggcaaaatttacggatttagaactctgccaacccatc
ctggatgtgctggttgaacttggatatgacacacccacaccaattcaggctcagaccatt
ccccatctgctggaaggcagagacctggtaggtcaggcccagaccggaaccggtaaaacg
gccgcatttgccctgcctttactttcgaaaattgacctggaactcagagccccacaggtt
ctggttctggctcccacccgggaactggccattcaggttggcgaatcgttcaaagaatat
ggttcacaactcaaaggcttacaggttttgccaatttatggtggcgctgatttcaaagga
cagctgcaaccactaaaacgaggcgtccatgtcgttgtcggtactcccggccgcgtgatg
gatcacatgcgtcgtggcaccctgaaactcgacaacctgcgttgcctggttctggacgaa
gccgacgaaatgctgcgaatgggctttattgacgatgtagaatggattctggagcagact
cccgataaccatcagactgcattgttttcagcaacgatgcccgaagcgattcgccgcatt
gccggtaattacctgaaatcaccgcaggaaattacggtcaaagataaaacccgaacggct
gataccatccgccagcggtactggctggccaaaggccatcacaaactggacgccctgacc
cggattctggaagcagaagaaacggatggcgtgatcatcttcgttcgtaccaaaagcatc
accaccgaactttcggaaaaactggaagcgcgcggttttctcgctgccccactgaatggt
gatatcccgcagaagcagcgcgaacgcactgttggacggttaaaagccggccacgtcaac
attgtcattgcaactgacgtcgccgcccggggactggacgttgatcggatcagccatgtg
atcaactacgatctgcctggtgattccgaagcttacgtgcaccgcatcgggcgaaccgga
cgtgcaggccgcacaggcgaagcgattatgttcgtctctccccgtgagcagcgttctctg
tccgggattgaacgggcgatcaagcttaaaattgaacggatggaacttccttccatcaat
caaatcaataagcgacgtacagaacgcttcaaagagtctgtgaccaaagccatggatagt
ccagacttcgaacagttccagaaactgctgagcgaattcaagacggaatcagagcgatct
gagatcgacatcgcagctgccctggcctgtatgttccagggaaaacgtcccctgttcctg
aaagagacaccacagcaaagagaaacgtcccatcgggaaaccccgcaacgacagcgggac
agttctggaaagcctcaattccagtctgaacgccgtttctccagggaaaaagaattcaaa
aacaaagaattcacgaaggataaagagaaggtgtttactcccaggcgggaaagagccacc
agtgaaacccccgaggaaggcatggagcgtttccgcgttcaagtgggccgcagccacggt
gtcaaaccaggtaatattgttggtgcaatcgcaaatgaagctaacctggacagtcagtac
atcggacgaatcgatatcttcgatgaatacagtactgttgatcttccggaaggcatgcca
cgcgatatctttcgggcattgaaaaatgtctgggtctccggacaacagttacgcatctcc
cgacttgatcagactgaatcaggtgccccgaaacgtaagcgtttcaaatcaaagggtaaa
cccagacagcagaaagcttaa
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