Gemmata massiliana: SOIL9_82110
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Entry
SOIL9_82110 CDS
T06634
Name
(GenBank) transcription-repair coupling factor : Transcription-repair-coupling factor OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=mfd PE=3 SV=1: CarD_CdnL_TRCF: DEAD: Helicase_C: TRCF
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gms
Gemmata massiliana
Pathway
gms03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SOIL9_82110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gms03400
]
SOIL9_82110
Enzymes [BR:
gms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SOIL9_82110
DNA repair and recombination proteins [BR:
gms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SOIL9_82110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
VTS00357
UniProt:
A0A6P2DH40
LinkDB
All DBs
Position
1:complement(8755212..8758640)
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AA seq
1142 aa
AA seq
DB search
MTTAAVAAPADAGLRALPSLLETTEGWAELRAALLSGRSGTVDGAWGSSAALAAATLAAE
TPGTLLVVVPNPTDVEPWQEDIASFTGTRPALFEAWESWPVTSNKGKLDPITTSRLRLLQ
QLTSGAPKIVVCGVASVCQPVPERADLAARGRTISANEIVDPSELAEWLVTNGYKRVDAV
EYPGEFSRRGGICDIFPPDAPDPYRFEFFGDEVESIRSFAAGSQRSLEKKNSVVLLGVEI
VEPSVSAETESNNSPPKRGLGGIAPARPRGHIADYLPPDSWVVLVEPRELKEQAKHFYER
VATTEGLHSPEQAFAHLMKRPSVVLSALPRPSVEASVHLRVESVNRFSGSVHRVRDELDS
IAHSSSARVLIACQSEAEVHRLTEVLKAGKLAESHRLQLVTGHVRGGFRLVESGTIVLGS
HEIFHKDLLPPGVKAQTRSSRQIESRAIDSFLDLNDGDYVVHVAHGIARFRGMHMLEKAR
GQDAEFGEESTEPSSSRKAESRTAGPATEEHLVLEFRDGMFLYVPATRIDLVQKYVGGSQ
TEPALSKPGGTSWGRKKEKVAEAVRDMAAEMINIQAVRQAVPGHQFPPDSDWQKEFEAAF
PYQETPDQLSAIVEVKGDLEKSKPMDRLICGDVGYGKTEVAIRSAFKAVDSGKQVAILVP
TTVLAEQHYRTFTQRYAEYPFVVDVVNRFRGGAKQKETLKKLATGEVDVIVGTHRLLSKD
VKFKDLGLVVIDEEQRFGVEHKERLKHLRAMVDVLTMTATPIPRTLHASLLGIREISNLE
TPPADRQPVETHITRWDDKLIRNAILREMNRGGQVYFVHNRVQDIFDIATKVRILVPEAK
VTVGHGQMDAHDLEKAMVGFVRKDADILVATTIIESGLDIPNANTIFINDADTYGLADLH
QLRGRVGRSKHRSYAYFIVNPLKLLNPTAQRRLKAIEEVTELGAGVKIAMRDLEIPGAGN
ILGAEQSGHIAAIGYELYCQLLENAVRALKQQAPKVSVEVTVDLPWPAYLPRDYVPGQKL
RIEVYRRLARLRDPAKLADFRQELRDRYGPHPDPVEWLLRTTEIRLLCVKWQVASVHRHD
HNLVFTYRNPDRAKQLVAASKGRLKIVDEKSIYLRLKNEEDNPEGLYKLLLGVLKPAQNA
GK
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgacgacggccgctgtcgcagcgccggcggatgccggtttacgcgcccttcccagcctc
ttggaaacgacagaaggctgggccgaattgcgcgctgcgctcctctccgggcggagcgga
accgtagacggcgcgtggggatcgtccgcggctctagccgcagcgaccctcgcggccgaa
acgcccggtacgttgctcgtggtcgttcccaatcccaccgatgtcgagccgtggcaggaa
gatatcgcgtcgtttacgggcacgcgccccgcgttgtttgaggcgtgggaatcgtggcca
gtgacttccaataaggggaagctcgacccgatcacgacgtcccgactgcggttacttcag
caactcacttcgggcgcgcccaagatcgtcgtgtgcggcgtcgcgtcggtgtgtcagccg
gtgccggagcgcgcggacctggccgctcgagggcgcacgatcagcgcgaacgagatcgtg
gacccgagtgaactggccgagtggctggttacgaacggctacaagcgcgtggacgcggtc
gagtacccgggcgagttcagccggcgcgggggcatctgcgacattttccctccggacgcg
ccggacccgtaccggttcgagttcttcggcgacgaagtggagtcgatccgcagcttcgcg
gccggctcacagcgcagcctggagaagaagaacagcgtcgtgttgctgggcgtcgagatc
gtcgaaccgtctgtcagtgcagaaacagaatcaaacaattcgccccccaagagggggctc
gggggaatcgccccagctcgcccgcgggggcacatcgcggattacctgccgcccgattcg
tgggtcgtgctcgtcgagccgcgcgagctgaaggaacaggccaagcacttctacgagcgc
gtcgcgaccacggaggggctgcactcgccggaacaggcgttcgcgcacctgatgaagcgc
cccagcgtggtgctctccgcgttgccacggcccagtgtggaggcgtcggttcacctccgc
gtcgagtcagtgaatcggttcagcgggagcgttcaccgcgtgcgcgacgaactcgattcg
atcgcacacagttcctccgcgcgcgtactgatcgcgtgccagagcgaagcggaggttcac
cggctcacggaggtattgaaggcgggtaagctcgcggagtcgcaccggctccaactcgtg
acggggcacgtccgcggcgggttccgtctggtcgagagcgggacgatcgttctcggtagt
cacgagatctttcacaaggatctgctgccgcccggtgtgaaggcgcaaacgcggtccagc
cgacaaatcgagtcgcgcgcgatcgactcgttcctcgacctcaacgacggagactacgtc
gtccacgtcgcccacggaatcgcccggttccgcgggatgcacatgctcgaaaaggcccgg
gggcaggacgcggagttcggtgaagagagtaccgagccgagttcgtcccgaaaggccgag
tcccgaaccgcaggccccgcgacggaagagcacctcgtgctcgagttccgcgacgggatg
tttctctacgtcccggccacgcgcatcgacctcgtgcagaagtacgtgggcgggtcgcag
acggaaccggcgctgagcaagcccggcggtacgtcttgggggcgcaagaaggaaaaagtg
gccgaggccgtgcgcgacatggcggccgagatgattaacatccaagccgtgcgacaggcc
gttccggggcaccagttcccgcccgactccgactggcagaaagagttcgaggccgcgttc
ccgtaccaggaaactccggaccaactttccgcgatcgtcgaagtgaaaggcgacctggaa
aaatcaaagccaatggaccgtctcatttgtggcgacgtcggctacggcaaaaccgaagtc
gcgatccggtccgcgttcaaggcggtcgatagcggcaaacaggtcgcgatcctcgtgccc
acgacggtgctcgcggagcagcactaccgcacgttcacgcagcggtacgccgagtacccg
ttcgtggtcgatgtggtgaaccgctttcggggcggggccaaacagaaggagacgctgaag
aagctcgcaacgggtgaggtggacgtgatcgtcggcacgcaccgtttgctctcgaaagac
gtgaaattcaaagacctgggcctcgtggtgatcgacgaggagcagcggttcggcgtcgag
cacaaagagcggctcaaacacctgcgcgcgatggtggacgtgctcacaatgaccgcgact
cccattccgcgcacgctgcacgcctcgctgctcggtatccgcgaaatcagcaatctggag
acgccacccgcggaccgccaaccggtagaaacgcacatcacgcgctgggacgacaaactc
attcgcaatgcaatcttgcgcgaaatgaaccgcggcgggcaggtgtacttcgtccacaac
cgcgtgcaggacattttcgacatcgcgacgaaggtccggattctcgtgccggaagcgaag
gtgacggtcgggcacgggcagatggacgcgcacgatctcgaaaaagcgatggtgggcttc
gtgcgcaaagacgcggacatcctggtcgcgaccacgatcatcgaaagcggcctcgacatt
ccgaacgcgaacaccatcttcatcaacgacgcggacacctacgggttggcagacctgcac
cagttgcgcggtcgcgtcgggcggtcgaagcaccgttcgtatgcgtacttcattgtgaac
ccgctgaagctgctgaaccccaccgcacagcggcggttgaaggcgatcgaggaggtcacc
gaactgggcgccggggtcaagatcgcgatgcgcgatctggagatccccggcgccgggaac
attctgggcgcagagcagagcgggcacatcgcggccatcggctacgaactgtactgccag
ctcctcgagaacgcggtgcgggcgctgaagcagcaggcgccgaaggtgtcggtagaagtc
acggtcgatctgccctggcccgcatacttgccgcgcgactacgtgccggggcagaagttg
cgcatcgaagtgtaccgccggctcgcgcggctccgcgacccggcgaagctcgccgacttc
cggcaggaactccgggaccgctacggcccgcacccggacccggtcgagtggctgctgcgc
acgacggaaatccggctcctgtgcgtgaagtggcaggtcgcgagcgttcaccgccacgat
cacaatctcgtgttcacctaccgcaacccggaccgcgccaagcaactcgtcgccgccagc
aaggggcggctcaagatcgtggacgagaagagtatctacctgcgtctgaagaacgaagag
gacaatccggagggattgtacaagctgttacttggtgtgctgaagccggctcaaaatgcg
ggaaaataa
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