Girardinichthys multiradiatus (darkedged splitfin): 124861850
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Entry
124861850 CDS
T08099
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
124861850 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gmu03400
]
124861850 (lig4)
Enzymes [BR:
gmu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
124861850 (lig4)
DNA repair and recombination proteins [BR:
gmu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
124861850 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
124861850
NCBI-ProteinID:
XP_047211758
LinkDB
All DBs
Position
24:complement(17037091..17053412)
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AA seq
910 aa
AA seq
DB search
MEGSSKSDAAAEPSVAAQVPFLHLCTTLEKIQKSKLRPDKSKILGDFIESWRKFHAALHK
SNPKTIDSFYPAMRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKNGPEASKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVAINNASKQKDLVKKNLLHLI
TQSSALEQKWLIRMILKDMKLGVSKETVLQVFHPDAAELYNVNTDLKKVCQQLHDPSVSL
SEVSIELFSAFKPMLAAVANIRNVEKQMGNSPFFIETKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGGSPLEGSLTPYIHNVFKSNIVNCILDGEMMAFNPTAETFMQKGSKFDIKRLM
DDSELQTCFCVFDVLLVNNQKLGKEPLKKRYEILQTVFTPVKGRIHVVPKTEVRTMQEVI
GALNDAIDYREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAVAEAPKLGEKPSVFHSFCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
ASILCGAERPEVYIEPCNSVIIQVKAAEIVGSDMYKTNCTLRFPRIEKIREDKEWHQCVT
LAELDEFRSKASGKLASRHLHIDNDEPQKKKRKLPVKPKKVVGIIDHFKPQDLSGVSKET
DMFEDVEFCILNGTEDHPKSELEKGVARCGGIVVQNPGQDTYCVIAGVENMRVKNLISSN
QHDVVWASWLVECLNQKKVVPWQPRHMIHMSPSTREHFAKEYDCYGDGYFVDIDEQQLQE
VFGRIDSKQAVTAVNAAQVEERYGWDDLPTSMFRPFMVYLDMFADIGDPKSAIHATCLDI
RALEVRYHGGTVVQALQEGVSHVVVEEESRLLDLRTLRRCFRRKFKIVRDSWVTDSIKAG
YLMDDADYLV
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggagggaagttccaaaagtgatgctgctgctgagccgagtgttgctgctcaggttcct
ttccttcatttgtgcacaactttagagaaaatccagaagtccaaactccgtccagataaa
tccaagatccttggggatttcattgaatcatggcgaaaatttcatgctgcactccacaag
agcaaccctaaaactatagactccttctaccctgctatgcgccttatcgtcccccctttt
gaacgagagcgaatggcatatggcatcaaagagagcatgctagctaagctgtacatagat
gttttaggcctaccaaagaatggcccagaagccagtaaactgcttaactaccgtgctccg
actacatcccaaggagaagctggggactttgccggcatggcatactttgtgctaaagaaa
cgatgcaccagccagggaaacctcagtatcaaagaggtcaatgactttctagactcagtg
gctatcaacaatgccagcaagcagaaggatctggtgaaaaagaacctgctgcatctcatc
acacagagctcggctctagagcaaaaatggcttatcagaatgattctgaaagacatgaag
cttggagtcagcaaggaaactgttctccaggtcttccacccggacgccgccgagctctac
aacgtcaacactgacttaaagaaagtatgccagcagctgcacgacccctccgtgtcttta
agcgaagtctcgattgaacttttctctgctttcaagcctatgttggcagcggtggccaac
atccgcaacgtagagaagcagatgggcaacagccccttttttattgagacaaagctggat
ggggagcggattcagctgcacaaggatggagacgtgtacaagtacttcagccggaatgct
tttgaatacacacagcagtttgggggatcaccgctcgagggatcgctcactccttacatc
cacaacgttttcaaaagcaacattgtaaactgtattctggacggtgagatgatggcgttc
aacccgaccgcagagaccttcatgcagaaagggagcaaatttgacattaagagactgatg
gacgactcggagctgcagacgtgcttctgtgtgtttgacgtgttgttagtcaataaccaa
aagcttggcaaagagcccctgaagaagcggtacgagattcttcagaccgttttcacccct
gtcaagggaaggatacatgtggtgccaaagactgaagtcagaaccatgcaagaggtcatt
ggtgctcttaatgatgctattgactacagggaggaggggatcatggtgaaggacccttta
tccatttataaacctgataaacgaggggagggctggctgaaaataaagccagaatacgtg
gacggtttgatggatgagcttgacctgctgattgtcggtggttactgggggaaaggaaga
cggggtggaatgatgtcccactttctatgtgctgttgctgaagcgccaaaacttggtgag
aagccttcagttttccattccttctgccgcattggttcaggttacactatgaaggagttg
tatgacctcgggttgaagctcgctaagcactggaaagtctaccggaagaacgacccacct
gcatccatcctctgtggagcagagagaccagaagtgtacattgaaccctgcaactcggtc
atcatccaggttaaagcggctgagatagttggaagtgacatgtataagaccaactgcaca
ctgcgcttccccagaatcgaaaagatccgtgaggacaaggagtggcaccagtgcgtgact
ctggcagagctggatgagtttcgcagcaaggcatcgggaaaactggcctcgcgacacctt
cacattgacaacgatgaaccccaaaagaagaagcggaagctgcctgtcaaacctaagaag
gtggtcggcatcattgaccactttaagccccaggatctgtccggggtttccaaggagacg
gatatgttcgaggatgtggagttctgcatcctgaatggcactgaagatcacccaaagtca
gagctggagaagggtgtggccagatgtggaggtattgtggttcagaacccaggacaggac
acctactgcgtgattgctggcgtggaaaacatgcgtgtgaagaacctgatttcgtcgaat
caacacgacgtggtttgggcgtcctggctggtggagtgcttgaaccagaaaaaagtggtg
ccatggcaacctcgccacatgatccacatgtctccctcgacgcgggaacactttgccaag
gagtatgactgctacggcgacggctactttgtggacattgacgagcagcagctgcaggag
gtgttcggcaggatcgacagcaagcaggcggtgacagcggtcaacgcggcacaggtggag
gagcgttacggctgggatgaccttcccacaagcatgttcagacccttcatggtttacttg
gacatgtttgccgacattggagatcctaaaagcgccatacatgctacctgtctggacatc
agggcgttggaggttcgatatcatggagggacggtggtgcaggcgttgcaggaaggagtt
tcacatgttgttgttgaggaggagtcaagacttctggacctaaggactctacgacgctgc
tttaggaggaagtttaagattgtaagagactcgtgggtgactgactcaatcaaagcaggc
tatctgatggacgatgccgactacttggtttaa
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