Girardinichthys multiradiatus (darkedged splitfin): 124873680
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Entry
124873680 CDS
T08099
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03013
Nucleocytoplasmic transport
gmu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124873680
03015 mRNA surveillance pathway
124873680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmu03019
]
124873680
Enzymes [BR:
gmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124873680
5.6.2.5 RNA 5'-3' helicase
124873680
Messenger RNA biogenesis [BR:
gmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124873680
mRNA cycle factors
Common to processing body (P body) and stress granule
124873680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
124873680
NCBI-ProteinID:
XP_047230478
LinkDB
All DBs
Position
9:complement(12259968..12302573)
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AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDGQING
PDEGLHNGGMEDPVAKSSHLLGELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHMVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPGATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNYYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSSAAGRPSNMYFQTHDQIGMIGTGPGQMA
AMNLPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRARGSANQGTSQGNGP
HSQASQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcttggacaccgaagaa
gcggagctgctcggagcggacacccagggctccgagtacgacttcactgacttcactctt
ccgagccagacgcagacgcaaggccagacccagagccagttggacgggcagataaatggt
cctgatgaaggtcttcacaatggaggaatggaggaccctgtggccaaatccagtcatttg
ttgggtgagctcaactttgaggaggatgaagaagatacttactacaccaaagatcttcca
attcacgcatgcagctactgtggtatccacgacccagcgtgtgtggtgtactgcaacacc
agcaagaagtggttctgtaatggccgtggtaacacatctggcagccacattgtgaaccac
atggtgcgggccaaatgtaaagaagtgaccctgcataaagatgggccgctgggcgaaacg
gtgctggagtgctacaactgtggctgtcgcaacgtcttcctgctgggcttcatcccagct
aaagctgactctgtggtggtgcttctttgcaggcagccctgtgcaagccagagcagcctg
aaagacatcaactgggacagctcacagtggcagcccctgatccaggatcgctgtttcctg
tcctggctggtaaagatcccatcagagcaggagcagcttcgagcccgtcagatcactgcc
cagcagatcaataagctggaagaactctggaaggacaatcctggtgctactttggaagac
ttggagaaaccaggagtagatgaagaacctcagcatgtgctgctgcgctatgaagacgcc
taccagtaccaaaacatctttggccctttggtcaaactggaggccgactatgacaaaaag
cttaaggagtcacagactcaagacaatataaccgtcaggtgggacctggggttaaacaaa
aagcggattgcatatttcacacttcccaagacggattcaggtgatatgaggctgatgcag
ggtgatgagatctgtctgcggtacaaaggagacttggctcctctgtggaaaggaattggt
cacgtcatcaaagtccctgacaactatggggatgaaattgccattgagttgcgcagcagc
gtcggagcacctgtggaaattccacataacttccaggtggactttgtttggaaatcaact
tcctttgacaggatgcagagcgccctgaagacctttgctgttgacgaaacctccgtgtct
ggctacatttaccacaaacttctgggccacgaggttgaggatgtcaccatcaagtgccag
ttgccaaagcgcttcactgcccagggcctgcctgacctcaatcactcacaggtttatgct
gtaaagacagtgctgcagaggccgctcagtctcatccaggggccgcctggcaccggaaag
actgtcacctctgccacaatcgtgtaccacctgtctcgacagggcaatggaccagttctg
gtgtgtgctcccagtaacattgctgtggatcagctgacggaaaagatcgacaagacaggc
ctgaaggttgtcaggttgtgtgctaagagccgggaggccatcgagtctccagtctcgttc
ctggctctccacaaccagatcagcaacatggacagcatgccagagcttcagaaactgcag
cagctgaaggatgagactggagagctgtcgtccgctgatgagaaacgctaccgcgctctg
aagcgcaccgctgagagggagctgctcatgaacgctgatgtgatttgctgcacctgcgtt
ggagctggagatccccgtctggccaagatgcagttccgctccatcctgattgacgagagc
actcaggccactgagccggagtgcatggtgcccgtagtgttgggagcaaagcagctgatt
ctggtgggtgaccactgccagctgggtcctgtggtgatgtgtaagaaggcagccaaggca
ggtctgtctcagtctctgtttgagcgactggtggtgctgggaatccggccaatccgcctg
caggtccagtaccgcatgcacccagctctcagtgccttcccctccaacatcttctacgaa
ggctccctgcagaatggcgtcacagcagctgatcgcatcaagaagggttttgactttcag
tggcctcagccagacaagcccatgttcttctacgtgactcagggtcaggaggaaattgcc
agctctggaacatcatatctgaacaggactgaggctgcaaacgtggagaaaatcaccacc
aggttgctgaaggctggagctaaacccgatcagatcggtatcatcaccccgtatgaggga
cagcgctcatacctggtccagtatatgcagtttagtggctcccttcacaccaaactgtat
cagcaagtggaaattgccagtgtggacgcctttcagggcagagaaaaggacttcatcatc
ctttcttgtgttcgagctaatgagcatcagggcattggcttcctgaatgacccgcgtcgt
ctcaatgtggccctgaccagagcaaagtacggtgtgatcattgtggggaatccgaaggcg
ctctccaagcagcccctgtggaacaacctgctgaactactacaaggagcagaaggtcctg
gtggagggacccctcaacaacctcagagagagcctcatgcagttcagcaagcctcgtaaa
ctggtcaacaccatcaacccgggaggacgtttcatgagtactgccatgtacgacgcccgt
gaggcgctcatcccaggctccgcctacgaccgcagcagtgctgctggacgcccgtccaac
atgtactttcaaacacatgatcagatcgggatgatcggaacaggaccgggtcagatggcg
gcgatgaatctcccgatacccttcaacctggtgatgcctccaatgcctccacccagctat
ctgggtcagaccaacggtcctgctgcaggccgtggtgctatgaagggtaagcctgggcgc
ggcggaagacagagggcccgtggctcggcgaaccagggcaccagtcagggtaacggaccg
cacagccaggccagccaggacggcgcctcccaatctttctcccaggggccgctgactcag
ggttacatctctatgagccagccctcccagatgagccaacctggcctctcccagccagag
ttgtcccaggatagctacctgggtgatgaatttaagtcccagatcgacgtggctttgtcc
caggactcgacttaccagggtgaacgtgcgtaccagcatggcggcgtgactggactgtca
cagtactaa
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integrated database retrieval system
