Girardinichthys multiradiatus (darkedged splitfin): 124878386
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Entry
124878386 CDS
T08099
Symbol
kdm2ba
Name
(RefSeq) lysine (K)-specific demethylase 2Ba isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
124878386 (kdm2ba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gmu03000
]
124878386 (kdm2ba)
04121 Ubiquitin system [BR:
gmu04121
]
124878386 (kdm2ba)
03036 Chromosome and associated proteins [BR:
gmu03036
]
124878386 (kdm2ba)
Enzymes [BR:
gmu01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
124878386 (kdm2ba)
Transcription factors [BR:
gmu03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
124878386 (kdm2ba)
Ubiquitin system [BR:
gmu04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
124878386 (kdm2ba)
Chromosome and associated proteins [BR:
gmu03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
124878386 (kdm2ba)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
124878386 (kdm2ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
PHD
Motif
Other DBs
NCBI-GeneID:
124878386
NCBI-ProteinID:
XP_047238259
LinkDB
All DBs
Position
12:17112378..17129045
Genome browser
AA seq
778 aa
AA seq
DB search
MALSMSGDDEEYESESEQQRAVNRPKPKMGTTSAVKLPSNRSASGARRRRTRCRKCEACL
RTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCKEAGKEDTLEDEEEK
FNFMLMECSICNEIVHPNCLKVSDASGVVNDELPNCWECPKCNHAGKSGKVLKQKRGPGF
KYASNLPGSLLREQKPAKEEGDLSSATKRKPERDETPRYRTEEALHRQPPLLSPSSLPRP
RPEDKLRKKRKLFDDDEEEELCVRKKEKSDDPYFSKLLSQVKTEKEEEDDEDEEGGRESH
FRSGVDRKGRFGEPEEEGDYRDSRNDSLNSSIKTPLGDSDHSLCSSPQAGPSSEGGSETQ
EKGPRPKARRKRRLPNRELSRELSKALNQEIQKTEDCLANENRQPLKVEPETENEEPKKL
FRNGNELGDQRSHLRTKEMNGNTWDLRHFYPSQITPLGFNRSTPTTRPVPPRSPPKCVQM
ERHVIRPPPISPPPDRLPLKDGKAHILQREVWMKIFGYLSHQELCVCMRICKTWNRWCCD
KRLWTNIDLNRCTSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRVLKLSG
CSWAAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRCKLRNVEDL
RLAGLDITDASLRLISRQMPLLSKLDLSYCNHINDQSVNLLTAAGTTTRDSLTDINLSVC
NRVTDHSLNYFKRCGSICQIDLRFCKQVTKTACEHFIAEMSVSVPFKLKEDKLLQKIS
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtcaatgagcggagacgatgaagaatatgagtcagagtccgagcagcagcga
gcagttaaccggccaaagccaaagatggggacaacgtcggccgtcaagctgccgtccaac
cgcagcgcgtcgggagccagacgcaggaggacgcgctgtcggaagtgtgaagcgtgtctc
cgcacagaatgtggagagtgtcacttttgtaaggacatgaagaagtttggagggccaggg
cgcatgaagcagtcctgcatcatgaggcagtgcattgcgcctgtcctgccccacacagct
gtgtgtgtcgtgtgtaaagaagcggggaaggaggacacgcttgaggatgaagaagagaag
tttaacttcatgctaatggagtgctccatctgcaatgagattgtccacccgaactgcctg
aaggtgagcgacgcctccggagtggtgaacgatgaactgcctaactgttgggaatgtccc
aaatgcaaccacgctggcaaaagtggaaaagtattgaagcaaaaaaggggccccgggttc
aagtacgcctccaacctccccggctctttgctgagggaacagaagcctgcgaaggaagag
ggggacctttcttctgcgacgaagaggaagccagagcgagatgagacacccaggtacaga
accgaggaggctctccatcgacagccgccactgctttcccccagcagcctgccaaggccc
agacccgaggacaagctgaggaagaagaggaagcttttcgatgatgatgaggaagaggaa
ctctgtgtgaggaagaaggagaagtcggatgacccatatttttctaaacttctttcccaa
gtcaagacagaaaaggaggaggaagatgatgaagatgaggaaggaggaagagagtctcat
ttccggagtggcgtggacaggaaaggtcgctttggagagcctgaagaggaaggggattat
agggactcaaggaacgactctttgaattcttccattaaaacaccacttggagacagcgac
cactctctctgcagctctccgcaggccggccccagcagcgagggcggaagtgagacgcag
gaaaaagggccccgtccaaaggctcgccgtaagaggcgtttgcccaacagagagctgagc
cgagaactcagcaaagcactgaaccaggaaatccagaagactgaggactgcctggccaat
gagaacaggcaaccactaaaggtggaaccagagacggagaacgaggaaccaaagaagctg
ttccgcaatggtaatgaacttggcgaccagaggtctcaccttaggaccaaagagatgaac
gggaacacctgggacctgcgccacttttacccaagtcagatcactcctctgggcttcaac
cggagcaccccgactacacggccagttcccccgcgctccccgcccaagtgtgtccaaatg
gaacggcacgtaattcgaccgcctccgatcagcccgccccctgacagactgcccctgaaa
gacgggaaagcacacatcctgcagcgcgaggtctggatgaagatatttggctatctctct
caccaggagctgtgtgtctgcatgagaatctgcaagacgtggaaccgatggtgttgcgac
aagagactttggacaaacatagatctgaatcgctgcacctccatcaccccgcttatgctg
agtgggatcatccgcaggcagccagtctccttggacctcagctggaccaacatctccaaa
aaacagttgagctggctcattaatagattaccaggtctgcgagtgttaaagctgtcgggt
tgttcctgggctgctgtctctgcactgtgcacctccagctgccccctgctgcgcactctg
gatgtccagtgggtggagggactcaaagatgcacagatgagggacctcctctcaccgccc
actgacaatagaccaggtcagctggataatcgctgcaagctgcggaacgttgaggacctg
cggctggcagggctggacatcaccgacgcgtccttgcgtctcatcagtcgacagatgcct
ctgctgtccaagctagacctgagttactgcaaccatatcaacgaccagtctgtgaacctg
ctcactgcagcaggaactacgaccagagactccctcacagatatcaacctatcagtttgt
aacagagtcacagatcattcactgaactatttcaagcgctgtggcagcatctgtcagatc
gaccttcgcttctgcaagcaggtgaccaagacggcctgcgagcacttcattgcagagatg
tctgtgagcgtcccattcaaactgaaagaggacaagctgctgcagaagataagctag
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