Glycine max (soybean): 100816002
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Entry
100816002 CDS
T01710
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
100816002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gmx03400
]
100816002
Enzymes [BR:
gmx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100816002
DNA repair and recombination proteins [BR:
gmx03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
100816002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
100816002
NCBI-ProteinID:
XP_003546435
UniProt:
K7MBU8
LinkDB
All DBs
Position
15:14517293..14537003
Genome browser
AA seq
1171 aa
AA seq
DB search
MTEQTKLSVLCSLFTWTQRSKSAAKKRAKFRKFLDAFCTDHNFFPAVRLLLPNLDRERGS
YGLKESVLATSLIDALGISRDSPDALRLLNWRKGGAATGPTAGNFALVASEVLQRRQGTA
SGGLTIRELNELLDRLASAENRAEKILVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAWK
KLHGKDVVVECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYAHAMSEIIIQNVLVDRCILD
GEMLVWDTSLKRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSLIHQTLKERH
EILCKIVRPVKGRLEILVPNAGINSHISSGEPCWSFIAHNVDEVERFFKETIENRDEGIV
LKDHSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERP
SPNTHPKQFISFCRVGTGLSDDELDAVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPD
VWVDSPEKSIILSITSDIRTIESEVFSAPYSLRFPRIDRVRYDKAWYECLDVQSFIELVH
SSNGTTQRDTEYGSKQDSKPKRSKSSTRGEKKNLSIVPSHLIQTDVSSIKGGSLIFSNMM
FYFVNVPLSHSLESLHKIIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHYS
WVLDCYDQKKLVCLQPKYFLFLSELTKKKLQEEIDEFSDTYYLDLDLGVIKQLLSNIDRS
EDVSTVDHYRKKYCPKDKWSFFYGCSIYFHSAIPSLKSDWHFILQLAVRRLKLEVLMGGG
KVTSNLTCATHLVVLLVPGYQTDFEQIQSSFTSVKRKILRSKRLHIVKSQWLEDCSDSCQ
RLPEDSYSLKPWGIEETTAEDCELELGLEAHQSGDNVEDQNISFSDKGIQQRSSKAASED
SMALVSQEKGGKRKRGRPAGSGIKKVKQPAVKQARRARPQIAKKPAKICEYESSDESDSH
GKRPIEQEIDTRAGSLDFYKKRSEPQETEKRENVQVAEIEKNSEQNKLDKQKDLNDNERE
RMLVPEIEMSDRHNEQNNEVTEKLEISADPLQAMLFDMIPSLATQKVEQPMNRSVREEKL
PETSNAEAEPMTTKKKKVSYKDVASELLKDW
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgacggagcaaaccaagctgagcgtgctctgcagcctcttcacgtggacacagcggagc
aagtctgcggcgaagaagcgcgccaagttccgcaagttcctcgacgccttctgcaccgac
cacaacttcttccccgccgtccgcctccttctcccgaacctcgaccgcgagcgcggctcc
tacggcctcaaggagtccgtcctcgccacctccctcatcgacgccctcggcatctcccgc
gactcccccgacgccctccgcctcctcaattggcgcaagggcggcgccgccaccggcccc
accgccggcaatttcgccctcgttgcctccgaggtgctgcagcgtaggcaggggacggct
tcgggtggattgacgataagggagctgaatgagttgcttgaccggttggcttccgctgaa
aacagggctgagaaaattttggttctttctacccttatccaaaagacaaatgcacaggaa
atgaagtggattatcatgataatcctgaaagatctaaagctgggaattagtgaaaaaagc
atttttcatgaattccatcctgatgcagaagacttgtttaatgttacttgtgacttaaaa
ttagtatgtgaaaagctaagggatcggaatcaacgtcataagcggcaggatattgaagtt
ggaaaagctgtgcgcccccaattagctaagagagttgctaatgcaactgaagcatggaag
aagcttcatgggaaggatgtggttgttgagtgcaaatttgatggtgaccgcattcaaatt
cataaaaatggaactgaaatacatttcttctcaaggaactttatcgatcattctgaatat
gcacatgcgatgtcagaaatcataatacaaaatgttcttgttgataggtgcatccttgat
ggtgaaatgttggtgtgggacacatccttgaaacgttttgctgagtttggctcaaaccag
gaaatagccaaggcagcaagagatggtcttgatagtgatagacagttatgctatgttgca
tttgatatcctttattttggagatactagtttgattcaccaaactttgaaggaacgacat
gagattttgtgtaaaattgtaaggccagtgaagggtcgtttggaaattttggtacctaat
gctggtatcaacagtcatatttcttctggtgaaccttgttggtcatttattgctcataat
gtggatgaagttgagagattttttaaagaaaccattgaaaatagagatgagggaattgtt
ttaaaagaccacagctccaaatgggaacctagtgatcgtagtggaaagtggctaaaattg
aagcctgaatacattcaagctggctctgatctggacgtacttatcattggtggctactat
ggctctggacgacgtggaggagaggttgctcaattcttggttggccttgctgagcgtcca
tccccaaatacgcaccctaagcaatttatctccttttgcagagttggtactggactctct
gatgatgagcttgatgctgtagtgaccaaacttaaaccttacttcagaaagtatgaatat
ccaaagaagaggccaccaagtttttatcaagtaactaatcattcaaaagaaagacctgac
gtgtgggttgatagccctgagaaatcaattattctgtctataaccagtgatattcgaact
atagaatctgaggtattttctgcaccttacagtctcagatttcctaggattgacagggtg
agatatgacaaagcttggtatgaatgccttgatgttcaatcatttatagaactggtacat
tctagcaacggtaccacacagagggatacagaatatggcagcaaacaggacagtaaacca
aaacgatcgaaatcctccactaggggagaaaagaaaaatttgtccattgttccttctcat
ttaattcaaactgatgtttccagcattaaggggggctccttaatattttcaaatatgatg
ttctattttgttaatgtgcctctatctcattctctcgagtccttgcacaaaataattgct
gagaatgggggaactttttcaatgaatttgaataactcagtcacgcattgtgttgcagca
gacagcaaggggtttaaatttgaagcagcaaagcgtcatggtgatatcattcattattct
tgggtattagattgctatgatcaaaagaagcttgtctgcttacagcctaagtacttcctt
tttctatctgaactgacaaagaagaagttacaagaagaaattgatgagttctcagacact
tactacttggaccttgatcttggagtcatcaagcagctcttaagcaatattgataggtca
gaagatgtcagcactgttgatcattataggaaaaaatactgcccaaaggataagtggtct
ttcttttatggatgctccatttatttccactctgcaataccttcattgaaaagtgattgg
cattttatattgcaacttgctgtgaggagattgaagcttgaagttctcatgggtggtgga
aaagttacctctaatcttacttgtgcaacccatttagttgtcttgcttgtgccaggatat
cagactgactttgaacaaatacagagtagtttcacttcagtaaaaagaaaaattctccga
agcaagaggttgcatatagttaaatcccagtggttagaagattgttctgacagttgccaa
agattaccagaagactcctacagtttgaaaccctggggaatagaagagacaactgctgaa
gattgtgaactggagttggggttagaggctcatcagagtggagataatgtagaagaccaa
aatatttctttctccgacaagggaattcaacagaggagttcaaaagctgcaagtgaagac
agtatggctttggtatctcaagagaagggtggcaaaagaaaaagaggaagacctgcaggc
agtggtatcaaaaaagtaaaacaaccagctgtcaaacaagctcgaagagcacgaccacaa
attgcaaaaaagcctgctaaaatatgtgaatatgaatcgtcagatgaaagtgattctcat
ggcaaaagaccaattgagcaggagattgacacgagagcaggaagtcttgatttttacaag
aaacgttcagaaccacaggagactgagaaacgggaaaatgtccaagttgctgagattgag
aaaaattctgaacaaaataagttagacaagcaaaaggacttgaatgacaatgaacgtgaa
agaatgttggttcctgaaatagaaatgtctgataggcacaatgagcaaaacaatgaggtg
actgagaaattagaaatttcagctgaccccctgcaagcaatgttatttgacatgattcct
agccttgccacccaaaaagtcgagcaaccgatgaatcgaagtgttagagaagagaagcta
ccagaaacctccaatgcagaagcagagcctatgactacaaagaaaaagaaagttagctac
aaggatgttgccagtgagctgctgaaggactggtag
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