Glutamicibacter mysorens: XH9_10220
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Entry
XH9_10220 CDS
T08403
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gmy
Glutamicibacter mysorens
Pathway
gmy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
XH9_10220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gmy03400
]
XH9_10220
Enzymes [BR:
gmy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
XH9_10220
DNA repair and recombination proteins [BR:
gmy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
XH9_10220
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UTM45946
LinkDB
All DBs
Position
complement(2202169..2204691)
Genome browser
AA seq
840 aa
AA seq
DB search
MARREQTVKVAGHTLKVSNLDKILYPQTGTTKGEIMDYFQQVAPVLIPHAAWRPATRKRW
VDGVGAAEEPGKVFFRKDLEDSAPSWVPSAKLQHKTHANTYPLVNNEAVLAWLAQMAALE
IHVPQWRFDSSLEPANPDRLVLDLDPGPGAGLEQCAEVALICREILDGMELPSFPVTSGS
KGIHLYAGLDGKYTSDQVNEVAKELASTLEKEHPQLVLASMKRSLRENKVFVDWSQNNAS
KTTVCPYSLRGRARPTVAAPRTWQEIEAQGLEQLDFHEVLERIADGIEPLAQLASAQRQD
PDRLAVYRSKRDAALTPEPVPEQSGKAEKAQSVQSGNGGTGLSFVIQEHHARRLHWDFRL
EHERVLVSWAVPKGPPLEPGVQRLAVMTEDHPLSYASFEGSIPKGQYGAGEVSIWDSGRC
VIEKWREGKEVIALLTGDPAGGLGGVPRRFVLIRAAGMGGKDNWLLHLAKDQPSEAEGGA
PADSSGAGPDAAREPSAKQSAADLSGQPLRPMLAVPGTARDICIEQDWSFEMKWDGYRAI
AVVGDGGTKLISRNGYDLTGDFPELGILGSLLPDRSVVDGEIVALDPSGRPDFSLLQQRV
SHQRKKRTKQASAIRIQYMLFDVLQLPAGKGAGLEDLTALPYEQRRQRLAGLDIDHQYVQ
VPPAHTGTLEQAIETSRELGLEGVVAKERDSAYELGRRSGSWLKLKHQLHQEAVVIGWRP
GQGSRSRSLASLLLAIPGHGGLEYAGRVGTGFSDTQLAEIRERLEKIERKTPPAKDIPAA
HRRDARWVSPKYVAEVRYSELTSERLLRHPVWRGWRDDKHPDEVHWETADPSGNRTANDS
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggcacgcagggagcaaaccgtgaaagtcgcggggcacacgctgaaggtcagcaatctg
gacaagatcttgtacccgcagaccggaaccaccaagggcgagatcatggactacttccag
caagtggctccggtgctgataccgcatgccgcgtggcgccccgctacccgcaagcgctgg
gtggacggggtgggcgctgccgaagaaccgggcaaggtgtttttccgcaaggatcttgaa
gactccgcccccagctgggtaccctcggccaagctgcagcacaagacccatgcgaatacc
tatccgctggtcaataacgaggcggtgctggcctggctggcccaaatggcagcgctggaa
atccacgttccccaatggcgtttcgattcgtcgctggaacctgccaacccggaccggctg
gttctggacctcgatcccggtcccggtgccggcttggagcagtgcgctgaagtcgcgctg
atctgccgggagatcctcgacggcatggagctgcccagcttcccggtgacctctggttcc
aagggcatccacctctatgccgggctggatggcaaatacacctccgaccaggtcaacgag
gtggccaaggaactggcctcgaccttggagaaggaacatccgcaactggttctcgccagc
atgaagcgctcgctgcgcgagaacaaggtgttcgtggactggagccagaacaacgcctcg
aaaactactgtctgtccgtattcgctgcgcggccgcgcccggcccaccgtcgccgccccg
cggacctggcaggaaatcgaagcgcaggggttggagcagctggacttccacgaggtgctg
gagcgcattgccgatggaatagaaccgctggcgcaactggcctcggcgcaaaggcaggac
ccggatcggctggcggtctaccgttccaagcgtgatgcggcgctgacacccgaaccggtg
ccggagcaatccgggaaggctgagaaggcacagtccgtccagtccggcaatggcggcacc
gggttgtccttcgtcatccaggaacaccatgcccgccggctgcattgggatttccgcctg
gagcatgagcgagtgctggtctcctgggcagtgcccaagggcccgccgctggaacccgga
gtccagcggctggcggtcatgaccgaagaccatccgctatcctacgcaagtttcgaaggc
agcatcccgaaggggcaatacggcgccggagaagtatcgatctgggattcgggccggtgc
gttatcgagaaatggcgcgaaggcaaggaagtcatcgcgctactcaccggtgatccagca
ggaggactgggaggcgtgccacggcgtttcgtgctgatccgggccgcagggatgggcgga
aaggacaattggctgcttcatctggccaaggaccagccttcggaagccgagggcggggcg
cccgctgattccagtggcgcaggaccggacgctgctcgcgagcccagcgccaagcagtcc
gcggctgacctgtcgggccaaccgttgcgccccatgctggccgtgcctggcacggcccgc
gacatctgcatcgagcaggactggagctttgaaatgaagtgggacggctaccgcgcaatt
gcagtagtaggtgacggcggaacgaaactgatcagccgcaacggctatgacctgaccggc
gacttcccggaacttggaattctcggttcgctgctgccggaccgctccgtagtggatggg
gaaatcgttgccctggatccttcgggccgcccagatttctcgctgctccagcaacgggtg
tcccaccagcgcaagaagcgcacgaagcaggcctcggccatcaggatccagtacatgctc
ttcgacgtgctgcagttgcctgccggcaaaggcgccgggctagaggatctgactgcgctg
ccctacgagcaacgccgccagcggcttgcgggcctggatatcgaccaccagtacgtgcag
gttcccccggcccacaccgggaccttggaacaagccatcgagaccagccgcgagctaggc
ctggaaggcgtggtggccaaggaacgcgactcggcatacgagctgggccggcgcagcggc
agctggttgaagctcaagcaccagctgcatcaggaagccgtggtgattggttggcggcca
ggccaggggtcgcgcagccgcagcctggcgtcgctgctgctggccattccgggacatggc
ggtttggagtacgccggccgggtaggcaccggattcagcgacacgcaacttgccgagatc
cgcgaacggcttgagaagatcgagcgcaaaactcccccggccaaggacattcccgcagcg
catcggcgcgatgcccgctgggtgagcccgaaatatgtggcagaagtccgatacagcgaa
ctgacctcggagcgccttctgcgccatccagtgtggcgcggttggcgcgacgacaagcat
ccggatgaggtccactgggaaacagcggatccttccggaaaccgaaccgcaaatgacagc
taa
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