Glutamicibacter nicotianae: QQS42_10980
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Entry
QQS42_10980 CDS
T09135
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gnc
Glutamicibacter nicotianae
Pathway
gnc03420
Nucleotide excision repair
gnc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gnc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QQS42_10980
03430 Mismatch repair
QQS42_10980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gnc03400
]
QQS42_10980
Enzymes [BR:
gnc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QQS42_10980
DNA repair and recombination proteins [BR:
gnc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QQS42_10980
MMR (mismatch excision repair)
Other MMR factors
QQS42_10980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
PhoH
Motif
Other DBs
NCBI-ProteinID:
WIV42838
LinkDB
All DBs
Position
complement(2322207..2325524)
Genome browser
AA seq
1105 aa
AA seq
DB search
MSNIRFTPEELSAALGEQFPPTAQQSEIVAAPLEPMLVIAGAGSGKTKTMADKVVWLVAN
QLVRPEQILGVTFTRKAAGELSVRIRAKIAQLVSTGLLSAEETRDFLDPAVSTYHSYANT
LVQDHGLRLGLEEDSALLGAAQSWQVAHSVLERYTGNYEHLNSATSTLIDAIVSFSSEAS
EHLVTAPQAHQWIDQLVARLRSLPMDAEKPKKPTQAALKLIDKLASRATIAELAEEYAQE
KKRLGVMDYGDLVAHAARIAQEVPAAALAERESHKVVLLDEFQDTSHAQMVLFSQLYGEG
HPVTAVGDPNQSIYGFRGASAGQLFRFPEVFPIVRDTGREVAHVKHLTIAWRNTVNVLAA
ANSITAGGPQHQGPVSVKPLDSSAHAKAGRVVLNRCATVRDEAEAIADMIVAENRSTSEP
KTSAVLSRNRTQLSIMGEVLAERGIKYQLVGLSGLLSTPELTDLVACLHVLVDPLRSDKL
MRLLAGARWRLGASDLMAFADWSRRLERRRARGLQPDPAEDEETPTPDEAAAEAARAELN
DAASLVEALDFLPKEGWKSNDGRSISAAGYERLAALRDELASLRLLANDDLETLIRETER
AMNLDIEVAARPWISRDKARANLDAFADVVREYCRNAPRVELAGFLMWLEQAAEKEKGLP
LPSEDADPAAVQLLTVHASKGLEWDIVAVMTLNDGVFPGAKSDRWTSGDKALPWELRGDA
RDLPQWDTEQPALKELLEAESIFKDQVEDHHIAEERRLAYVAVTRAKSLLICSSSVWTST
RTKPTEASEFFNCLLPLAEGEDPQAEIGLWVKDEEAPEQNPSTLTPLEALWPYDPLEGPV
VTGGVQKTPYPYSRRKIIADVAEDLESIPADYEPLTGIGQQWAEEAEKLLGQREFLAVRE
RSIEVPEHVRASLFVELAEDPVGVLENLRRPVPRRPGLAARRGTAFHAWIEEFYEKTSML
DLGDLQEPADGYLDEALDLEAMKEAFLASEWSKLQPAYVEVPLETRVGPVAVRGRIDAVF
QMDDGTWLMLDWKTGRVPSGKDLRSKLVQLAVYRLGWSRLHGIPLEEIKAAFYYVSAGIT
IHAEHLSDEQELEQMISSAFEQLNG
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatatcagattcaccccggaagagctctcagcagcgctcggcgagcaattcccg
cccaccgcccagcagtccgaaattgtcgccgcgccgctggaacccatgctggtcatcgcc
ggcgccggctcgggcaagaccaagaccatggcggacaaagtcgtctggctggtcgccaac
cagttggtcaggccggaacaaatcctcggcgtgacctttacacgaaaggccgccggagag
ctgtcggtccgcatccgcgccaagatcgcccaactggtgtccaccgggctgctcagtgcc
gaagaaacccgcgacttcctcgatcctgcggtatccacctaccactcctacgccaacacg
ctggtccaggaccatgggctgcggcttggccttgaggaagacagcgccttgctgggcgcg
gcccagtcgtggcaggtggcgcactcggtgctggaacggtacaccggcaattacgagcat
ctgaacagcgccaccagcacgttgattgatgccatcgtctccttcagttccgaagcctcc
gagcacctggtcaccgcaccacaggcgcaccagtggatcgatcagctggtggcacgcctg
cgcagcctgccgatggacgcagaaaagccgaagaagccgacccaggcagcccttaagctc
atcgacaagctggcctcgcgtgccacgatcgccgagcttgcagaggagtacgcgcaggaa
aagaagcgcctcggggtgatggactatggcgatttggtagcccacgcggcgcgtatcgcc
caagaggtgccggcggctgcgctcgccgaacgggagagccacaaggtggtgctgctcgat
gaattccaagacacctcgcacgcgcagatggtgctcttctcgcaactctacggcgagggc
catccggttaccgcagtaggcgaccccaaccagtcaatctacggattccgcggggccagt
gccggacagctgttccgattcccggaagtcttcccgattgtccgggacactggtcgggaa
gttgcccatgtaaagcacctgaccatcgcatggcgcaacaccgtcaacgtgcttgccgca
gcgaatagcatcaccgccggcggaccgcagcatcaaggtccggtctcggtcaagcctttg
gattcctccgcgcatgccaaggccggccgggtggtgctcaaccgctgtgcgacggttcgc
gacgaagcggaagccattgcggacatgattgttgccgagaatcggtcaacttccgagccg
aaaaccagtgcagtgctctcgcgcaatcgcacccagctgagcatcatgggcgaggtgctt
gccgagcgcggcatcaagtaccagctcgtgggactttcgggattgctcagcacccctgag
ctcaccgacctggtcgcatgcctgcacgtgctggtggacccgctgcgctcggataagctc
atgcgcctgctggcaggagcccgctggcgcctgggcgcctccgacctgatggctttcgca
gattggtcccgccggctggaacggcggcgggcccgcggcctgcagccagatccggccgaa
gacgaagaaacgccaaccccggacgaggcagccgctgaagctgcccgcgccgaactcaac
gatgcggctagccttgtcgaagcattggacttcctgcccaaggaaggctggaaaagcaat
gacggccggagcatcagcgctgccggctacgaacggctggctgccttgcgcgatgaattg
gcaagcttgcggctgctggccaatgatgacctagagaccctgattcgcgagaccgaacgc
gccatgaacctggacatcgaggtggccgcccgcccgtggatttcccgagacaaggcacgc
gccaatctcgacgccttcgccgatgtggtgcgcgagtactgccgcaatgcgccacgtgtc
gagctggctggattcctgatgtggctggaacaggccgccgaaaaggaaaaaggcctcccg
ctgcccagcgaagatgcggatccggccgctgtacagttgctgacggttcacgcttccaag
ggattggaatgggacatcgtggcggtgatgaccctgaacgacggggtgttcccgggtgcc
aagtcggatcgctggaccagcggcgacaaggcgctgccctgggaacttcgtggcgatgcc
cgcgacctgccccaatgggacaccgagcagccggccttgaaggagctgctggaagccgaa
tcgatcttcaaggaccaggtcgaggaccatcatattgctgaagaacgccgcctggcctat
gtcgcggtaacccgcgccaagtccttgctgatttgcagcagcagcgtctggacgagcacc
cgcaccaagcccaccgaggcctcggaattcttcaactgcctgcttccgctggccgaaggc
gaagacccccaggctgaaatcggcctctgggtgaaggatgaggaagctccggaacaaaac
ccgagcacgttgacacccctcgaagcgctgtggccctacgacccgttggaaggccccgtg
gtcaccgggggagtgcagaagactccctatccgtactcacgccgcaaaatcattgcggat
gtggcggaggatcttgaatccattcccgccgactatgagccgttgaccggtattggccag
cagtgggctgaagaagcggagaaacttctaggccagcgagagttcttggctgttcgtgag
cgcagcatcgaggtaccagagcatgtgcgtgcttcattgtttgtcgagctggccgaagac
ccggtaggcgtgctggaaaaccttcgacgcccggtgccacgtcgcccgggcctggcagca
cggcgaggtaccgcgttccacgcctggatcgaggagttctacgagaagacctccatgctg
gatctgggagacctgcaggaaccagccgatggctatcttgacgaggcactggacctcgaa
gcgatgaaggaagcgttcctggcgagcgaatggtccaagctgcagcccgcctacgtcgag
gtgcccttggagacccgtgtgggtccggtcgctgtgcgcggccgcatagatgccgtcttc
cagatggatgacgggacctggctgatgctggactggaaaacgggccgggtaccgagcggc
aaggatttgaggagcaagctggtccagctcgcagtgtatcgcttgggctggtcacgcctg
cacggaatcccgctggaggagatcaaggccgccttctactatgtgtcggcgggcatcacg
atccacgcggagcatctctccgatgagcaagaactggaacagatgatcagcagtgcattc
gaacagctcaacggctag
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