Glutamicibacter nicotianae: QQS42_15435
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Entry
QQS42_15435 CDS
T09135
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gnc
Glutamicibacter nicotianae
Pathway
gnc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gnc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QQS42_15435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gnc03400
]
QQS42_15435
Enzymes [BR:
gnc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QQS42_15435
DNA repair and recombination proteins [BR:
gnc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QQS42_15435
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
DUF2375
Motif
Other DBs
NCBI-ProteinID:
WIV43679
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Position
3246522..3249020
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AA seq
832 aa
AA seq
DB search
MARREQTVKVAGHTLKVSNLDKILYPQTGTTKGEVMDYFQQVAPALIPHAAWRPATRKRW
VDGVGTAEEPGKVFFRKDLEDSAPSWVPSAKLQHKTHANTYPLVNNEAVLAWLAQMAALE
IHVPQWRFDSSLEPANPDRLVLDLDPGPGAGLEQCAEVALICREILDGMELPSFPVTSGS
KGIHLYAGLDGKYTSDQINEVAKELASTLEKEHPQLVLSSMKRSLRENKVLVDWSQNNAS
KTTVCPYSLRGRARPTVAAPRTWQEIEAQGLAQLDFHEVLERIADGMEPLAQLASAQRQD
PDRLAAYRSKRNASLTPEPVPEQSGKAEKAQSVQAGSDGTGLSFVIQEHHARRLHWDFRL
EHEGVLVSWAVPKGPPLEPGVQRLAVMTEDHPLSYASFEGSIPKGQYGAGEVSIWDSGRC
VIEKWREGKEVIAVLTGDSGGGLGGVPRRFVLIQAAGMGGKDNWLLQLAKDQPSAAEGGA
SADSSGAGPDAAREPSAKQAVADLSGQPLRPMLATPGTAGDFGVEQDWSFEMKWDGYRAL
AVVGDGVTKLLSRNGHDLTGDFPELGILGSLLPDRCVVDGEIVALDSTGRPDFSLLQQRV
SHQRKKRTKQASAIRIQYMLFDVLQLPAGKGAGLEDLTALPYEQRRQRLAGLDIDHQYVQ
VPPAHTGTLEQAIGTSRELGLEGVVAKERDSAYELGRRSGSWLKLKHQLHQEAVVIGWRP
GQGSRSRGLASLLLAIPGHGGLEYAGRVGTGFSDTQLAEIRERLEKIERKTPPAKDIPAA
HRRDARWVSPKYVAEVRYSELTSERLLRHPVWRGWRDDKHPDEVHWETADPS
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atggcacgcagggagcaaaccgtgaaagtcgcggggcacacgctgaaggtcagcaatctg
gacaagatcttgtacccgcagaccggaaccaccaagggagaagtcatggactacttccag
caagtggctccggcgctgattccgcatgccgcgtggcgccccgctacccgcaagcgctgg
gtggacggggtgggcactgccgaagaaccgggcaaggtgtttttccgcaaggatcttgaa
gactccgcccccagctgggttccctccgccaagctgcagcacaagacccatgcgaatacc
tatccgctggtcaataacgaggcggtgctggcctggctggcccaaatggcagcgctggaa
atccacgttccccaatggcgtttcgattcgtcgctggaacctgccaacccggaccggctg
gttctggacctcgatcccggtcccggtgccggtttggagcagtgcgctgaagtcgcgctg
atctgccgggagatcctcgacggcatggagctgcccagcttcccagtgacctctggttcc
aagggcatccacctctatgccgggctggatggcaaatacacctcagaccagatcaacgag
gtggccaaggaactggcttcgacgttggagaaggagcacccgcaactggttctctccagc
atgaagcgctcgctgcgcgagaacaaggtgctcgtggactggagccagaacaatgcctcg
aaaaccactgtctgcccatattcgctgcggggtcgcgcccggcccaccgtcgcggccccg
cggacctggcaggaaatcgaagcgcaggggttggcgcaactggacttccacgaggtgctg
gagcgcattgctgatggaatggaacccctggcgcaactggcctcggcgcaacggcaggac
ccggatcgcctggcggcctaccgctccaagcgcaatgcgtcgctgacacccgaaccggtg
ccggagcagtccgggaaggctgaaaaggcacagtccgttcaggccggaagcgacggcacc
gggttgtctttcgtcatccaggaacaccatgcccgccggctgcattgggatttccgcctg
gagcacgagggagtgctggtctcctgggcagtgcccaagggcccgccgctggaacccgga
gtccagcgcctggcagtcatgaccgaagaccatccgctatcctacgcaagtttcgaaggc
agcatcccgaaggggcaatacggcgccggggaagtatcgatctgggattcgggccggtgc
gtgatcgagaaatggcgcgaaggcaaagaagtcatcgcggtactcaccggtgattcagga
ggaggactgggcggcgtgccacggcgtttcgtgctgatccaggccgcagggatgggcgga
aaggacaattggctgcttcaactggccaaggaccagccttcggcagccgagggcggggcc
tccgctgattccagtggcgcaggaccggacgcagctcgcgagcccagcgccaagcaggcc
gtggctgacctgtctggccaacccttgcgccccatgctggccacgcctggcacggccggg
gacttcggcgttgagcaggactggagctttgaaatgaaatgggacggctaccgagcactt
gcagtagtcggtgacggcgtaaccaagctgctcagccgcaacggccatgacctgaccggc
gacttcccggaactcggaattctcggttcgttgctgccggaccgctgcgtagtggatggg
gaaatcgttgccctggattctacgggccgcccagatttctcgctgctccagcaacgggtg
tcccaccagcgcaagaagcgcacgaagcaggcctcggccatcaggatccagtacatgctc
ttcgacgtgctgcagttgcctgccggcaaaggcgccgggctagaggatctgactgcgctg
ccctacgagcaacgccgccagcggcttgcgggcctggatatcgaccaccagtacgtgcag
gttcccccggcccacaccgggaccttggaacaagccatcgggaccagccgcgagctaggc
ctggaaggcgtggtggccaaggaacgcgactcggcatacgagctgggccggcgcagcggc
agctggttgaagctcaagcaccagctgcatcaggaagccgtggtgattggctggcggcca
gggcaggggtcgcgcagccgcggcctggcgtcgctgctgctggccattccgggacatggc
ggtttggagtacgccggccgggtgggcaccggattcagcgacacgcaacttgccgagatc
cgcgaacggcttgagaagatcgagcgcaaaactcccccggccaaggacattcccgcagcg
catcggcgcgatgcccgctgggtaagcccgaaatatgtggcagaagtccgatacagcgaa
ctgacctcggagcgccttctgcgccatccagtgtggcgcggttggcgcgacgacaagcat
ccggatgaggtccactgggaaacagcggatccttcctga
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