Glaciecola nitratireducens: GNIT_1677
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Entry
GNIT_1677 CDS
T01632
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gni
Glaciecola nitratireducens
Pathway
gni03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GNIT_1677 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gni03400
]
GNIT_1677 (mfd)
Enzymes [BR:
gni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GNIT_1677 (mfd)
DNA repair and recombination proteins [BR:
gni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GNIT_1677 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AEP29793
UniProt:
G4QLC6
LinkDB
All DBs
Position
complement(1851437..1854946)
Genome browser
AA seq
1169 aa
AA seq
DB search
MSNLFSVPLPKAKSLNSSNIIDHIQWGELKGASQALSIANAAKQHNGPLLVLIEDSPSAI
KLEKELAFFLRNQKVHVQLFPDWETLPYDGFSPHQDIVSQRLETLYLLSKKQPGIFIVPI
NTILQRLAPVDYVGQHLMYLKVGETINTDEFKRKLEKSGYLHVSQVMTHSEFSVRGSIID
LFPMGSDQPFRIDLFDDEIDSIRYFDPDTQRGLEETKEIRLLPAREFPTDKDSITGFRER
YLDKFERSNTADKESIFYQVSKGTMPSGIEYYLPLFFEKTSTLFDYLNDDALMLYYGDLN
KASERFNKDLLQRYEQYRYNLARPLLSPIDLYLDSNELMSRLKQWPSAQIMSESLPKKAG
KHNFECRPIEGIGIDLTATNPYQAIQAEVKKAKEKNKKVIFCAESQGRKENLMDVLHKAK
IFPVNSPTFDAALNESTHSVFICVGMVENSFEFSDKKHAFLFVTETQLLGHKVSKRKLKD
KRKANDESAIVRNLAELTEGQPVVHIDHGVGRFLGLQTLDAGGVTTEYLAIAYAKQAKLY
VPVSSLHLISRFSGGDPDHAPLHNLGNDTWSKAKRKAAEKVRDVAAQLLDVYAKRAAKPG
YAYPIDWNEYKAFEDSFPFEETIDQKTAINAVLQDMGSPNAMDRLVCGDVGFGKTEVAMR
AAFIAASTGKQVAILVPTTLLAQQHYENFKDRFAQWPFKIEVISRFGSAKEQKAVIEDLA
DGQGDIVIGTHKLLQDDVKFKDLGLVIIDEEHRFGVRQKEKFKALRADVDILTLTATPIP
RTLNMALSGMRDLSIIATPPAKRLAIKTFVQVRQTDIIREAIMREILRGGQVYFLHNEVK
TIEKTAKEIEDIIPEARIAIGHGQMRERELENVMNDFYHQRYNVLVCTTIVETGIDVPTA
NTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAAKRLDAIASLEDLG
AGFALATHDLEIRGAGELLGDDQSGQINTIGFSLYMEMLEQAVEALKEGREPSLDDVLAA
QTEVDLRIPALLPDDYIGDVNTRLSLYKKLAGCKNQNEIDEYQIELIDRFGLLPDSAKNL
VKQSGLKLTAQKIGIRKIEATQTGGLIDFDQTTTIDAGFLIQLIQKHPSQYKFEGPQKLR
FMKKLDSAQQKLDHVRELLNKLLKECHAS
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatctattttctgtgcctttaccaaaggcaaaatcactgaatagctcaaacatt
attgatcatattcaatggggcgaactaaaaggtgccagccaagcactcagtattgcgaac
gcagcaaaacaacacaatggacctctactagtattgatagaggacagcccaagtgcaatt
aaactagaaaaagagctcgcctttttcctccgtaatcaaaaagtgcacgttcaactattt
cctgactgggaaacgctaccttatgatggtttctcgccgcatcaagatattgtttcgcag
cgcctagaaacactttatttgctgagtaaaaaacagcccggtatattcatagttcccatt
aatacgatcctgcagcgtttagcgccagttgactatgttggtcaacatctaatgtatttg
aaagttggcgaaacgattaataccgatgaatttaaacgcaagcttgaaaagtcaggatac
ctgcatgtaagccaggtaatgactcacagtgaattttcggtgcgcggtagcattatcgat
ttgtttcctatgggaagtgaccaaccgtttagaattgatttgtttgatgatgaaattgat
tcgattcgctactttgatccagacactcagcgtggcttagaggaaactaaagaaatacgt
ttgctgcctgctagagaatttccaacagataaagattcaatcactggcttcagagaacgt
tacctagacaagtttgagcgcagtaataccgcagacaaagaatctattttttatcaagtt
agcaaaggcacaatgcccagcggtatagaatattatttaccgctgttttttgaaaaaaca
tccaccttatttgattacctgaatgatgatgccttaatgctttattatggcgacctaaat
aaggcatctgaacggttcaacaaagatttattgcagcgctacgaacagtaccgttacaac
ttagcaagaccattactgtcgcctatcgatttatatctcgactcgaatgagctaatgagc
agacttaaacagtggccaagcgctcagataatgagtgagtcattgccgaaaaaagcggga
aagcataattttgaatgccgtccaatagaaggtattggcattgacttaacggcaacaaat
ccctaccaagctattcaagctgaagttaaaaaggcaaaagaaaaaaacaaaaaagtaatt
ttttgcgctgaatcacagggccgcaaagaaaacttaatggatgtgttgcacaaagcaaag
atatttccagtcaatagcccgacttttgatgctgcgctgaatgagtcaacacattctgtt
tttatctgtgtcgggatggtcgagaacagttttgagtttagcgataaaaaacatgctttc
ttatttgtcactgaaacacagttgctcggccataaagttagcaaacgaaaattaaaagac
aaacgcaaggctaatgacgaaagcgccattgttagaaatttagcagagctaacggagggc
cagccggttgtgcatattgatcacggcgttggtcgtttcttaggattgcaaacgcttgac
gctggcggtgttaccaccgaatatttagccatcgcttatgcaaaacaagcgaagttatat
gtgcctgtatctagtcttcatctcattagccgttttagtggtggcgatcctgaccacgcg
cctttgcataatcttggaaacgacacttggagcaaggctaaacgcaaagcggctgaaaaa
gtcagagatgttgcggcacaacttttggacgtttatgcaaaacgagcagcaaaacctggc
tatgcataccctattgattggaatgaatataaagcatttgaagacagcttcccgtttgag
gaaaccatagatcaaaaaacagctatcaatgcagtcctgcaagatatgggcagcccaaat
gcaatggacagattggtatgtggcgatgtcggtttcggtaaaaccgaggtggccatgcgc
gcagcgtttattgcagcatcaacaggaaaacaagtcgctattttggtaccaacaacgctg
ttagcacaacagcattatgaaaactttaaagatcgttttgcacagtggccatttaaaata
gaggttatctctcgctttggttctgccaaagaacaaaaagccgtcattgaagatcttgcc
gacggacagggtgatattgttatcggcacccacaaactgctgcaagacgacgtcaagttt
aaagacttaggccttgtcattatcgatgaagaacatcgcttcggcgttcgtcaaaaagaa
aaatttaaagcattgcgagccgatgtagatattctcacactaactgctacccctattcct
cgaacgttgaatatggcgcttagcggcatgcgtgatttatctatcatcgcaacaccgcca
gccaaacgacttgccataaaaacgtttgtgcaagtgcgtcaaactgacattattcgcgaa
gctatcatgcgcgaaattttgcgcggtggccaagtttacttcctgcacaacgaagtgaaa
acgattgagaaaacagctaaagaaatcgaagacatcattcctgaggccaggattgctatc
ggtcacggtcagatgcgtgagcgtgaactcgaaaacgtgatgaatgacttttatcaccag
cgctacaatgtattggtatgtaccactattgtcgaaacaggcatcgatgtccctaccgca
aataccatcataatggacagagcagaccatttaggcctggcacaattacatcagcttaga
ggtcgtgttggccgttcgcaccaccaggcctatgcttacttattaacgccacatccaaaa
cgcatgactaaggatgcagccaaacgccttgatgctattgcatcactcgaggatcttggc
gcaggattcgcacttgcaacgcacgatttagaaattcgtggggcgggtgaactattaggt
gacgaccagtctggacaaatcaatactattggctttagcctttacatggaaatgcttgag
caagctgtcgaagcgttgaaagaaggccgagagccatcattagatgacgtacttgccgct
cagactgaggttgacttgcgcatacccgccctacttcctgatgattatatcggcgatgta
aatacacgtttatcgctttataagaaactggctggttgtaaaaatcaaaacgagattgat
gaataccaaattgagctaatcgatcgcttcggtttactgcctgatagtgcaaagaatttg
gtcaaacaatcaggtcttaaattaacggcccaaaaaattgggattcgaaaaatcgaagca
acgcagactggcggtcttattgatttcgatcagacgacaaccattgatgctggcttttta
atacagcttatccaaaagcatcccagtcaatacaagtttgaaggccctcaaaagctaaga
tttatgaaaaagctcgacagtgcccagcaaaaactggatcatgttagagaattactcaac
aaactattaaaggaatgccatgcaagctag
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