Glaciecola nitratireducens: GNIT_2062
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Entry
GNIT_2062 CDS
T01632
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gni
Glaciecola nitratireducens
Pathway
gni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GNIT_2062 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gni03019
]
GNIT_2062 (pnp)
03016 Transfer RNA biogenesis [BR:
gni03016
]
GNIT_2062 (pnp)
Enzymes [BR:
gni01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GNIT_2062 (pnp)
Messenger RNA biogenesis [BR:
gni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GNIT_2062 (pnp)
Transfer RNA biogenesis [BR:
gni03016
]
Prokaryotic type
tRNA degradation factors
GNIT_2062 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH_2
S1_2
KhpA-B_KH
Dna2
PADR1_N
Motif
Other DBs
NCBI-ProteinID:
AEP30171
UniProt:
G4QLR5
LinkDB
All DBs
Position
complement(2289066..2291180)
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AA seq
704 aa
AA seq
DB search
MTPITKTFQYGQHTVTLETGVIARQATAAVMASMDDTSVLVSVVGKKETKADQGFFPLTV
NYQEKAYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNDFKNEVQIIITVVSAN
PEIPTDIISLIGTSAALAISGMPFSGPVGAARVGYKDGGYILNTRASEQEESQLDLVVAG
TKSAVLMVESEADILSEDVMLGAVMYGHEQSQTVINAITEFAAEVGTESWGWTAPAENTE
LKAKVKELAEAGMTEAYQISDKMVRKDAITAVTSKALETILEANPAQDPKEASDLLHDLE
SDVVRSRILAGEKRIDGRDPDTIRALNVATGLLPRTHGSALFTRGETQAIVAATLGTERD
AQMLDQLGGMATSRFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGMQAVMPSAEEF
PYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDENFVVLSDI
LGDEDHLGDMDFKVAGTTNGITALQMDIKIEGITHEIMQLALKQAKEARLHILEVMDSAI
SGHREEMSEYAPRIYTMKVDQDKIRDVIGKGGAMIRSITEASDTNIEIEDDGTIKIFATE
KAKADIAIDRIKAVTAEIEVGTVYNGKVMRIVDFGAFVEVLPGKEGLVHISQIAHDRVNK
VTDFLEEGQMVDVKVMEIDRQNRIRLSIKELLEKPAPAAPSEGE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
gtgactcctattactaaaacatttcagtatggtcagcatactgtcaccctagaaacgggt
gtaatcgcaagacaagcaactgcagcagtaatggcaagtatggacgatacgtctgtattg
gtttcagttgtcggtaaaaaagaaactaaagcagatcaaggtttcttcccattaacagtt
aactatcaagaaaaagcgtacgcagcgggcaaaatccctggtggcttcttcaaacgtgaa
ggtcgtccttctgaaagcgaaacattaatcgcacgtttaattgaccgtccaattcgtccg
ttatttccaaatgattttaaaaatgaagtgcaaataattattacagttgtttctgctaac
ccagaaatcccaactgacattatttctttaattggtacttctgctgcacttgctatttct
ggtatgcctttcagtggcccagtcggtgcggcgcgcgttggttataaagatggcggctat
attttaaatactcgtgcctctgagcaagaagaaagtcagttagaccttgttgttgctggt
actaaaagtgcagtattgatggttgaatctgaagcagacatattatctgaagacgtgatg
cttggtgcagttatgtatggtcatgagcaatctcaaaccgttattaacgcaattactgag
tttgctgcagaagtcggcacagaaagctggggctggacagcacctgctgaaaatactgag
ttaaaagcaaaagttaaagaacttgcagaagcaggtatgactgaagcttatcaaatttct
gataaaatggtgcgtaaagatgcgattactgctgtaacaagcaaagcattagaaaccatt
cttgaagccaatccggcgcaagatccgaaagaagcgagcgacctactgcatgacctagaa
agcgatgtggtacgttcacgtattcttgctggtgaaaagcgtattgacggacgtgatccg
gacaccatacgtgcactaaacgtcgcaactggcttgctgccaagaactcatggttctgca
ttattcacacgtggtgaaacacaagctatcgttgctgcaactttaggcacagagcgtgat
gctcagatgctagatcaacttggtggaatggcgactagccgtttcatgttgcattataac
ttccctccatactgtgtaggcgagactggttttgttggttcaccaaagcgtcgcgaaatc
ggccatggtcgtctagcgaaacgtggtatgcaagcggttatgccttctgctgaagaattc
ccgtatgttgtgcgtgttgtgtctgaaattactgaatctaacggttcatcttcaatggca
tcggtttgcggtacttcattggcattaatggatgcaggtgttccaattaaagcttctgtt
gctggtattgcaatgggcttagttaaatctgacgaaaacttcgttgtactttctgacatt
ttaggtgatgaagatcatcttggtgacatggactttaaagttgcaggtactactaacggt
attactgcacttcaaatggacattaaaattgaaggtattacgcatgagattatgcagtta
gcgctaaagcaagcaaaagaagctcgcttgcatatccttgaagtaatggattctgcaatt
tctggtcaccgtgaagaaatgtctgaatacgctccgcgtatatacacaatgaaagttgat
caagacaaaatccgtgatgttatcggtaaaggcggcgcaatgatcagatcgatcactgaa
gcttctgacaccaacattgaaattgaagatgacggcacaattaaaatctttgcaactgaa
aaagcgaaagctgatattgctattgaccgcatcaaagctgttacagctgagattgaagtt
ggtacagtgtataacggtaaagttatgcgtatcgtcgatttcggtgcatttgttgaagtg
ttaccaggcaaagaaggccttgttcatatcagccaaattgctcatgaccgcgtaaacaaa
gtaaccgacttccttgaagaaggccaaatggttgacgttaaagtcatggaaattgatcgt
caaaatcgtattcgtttaagtatcaaagagctattagaaaaaccagctcctgctgctcca
agcgaaggcgagtaa
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