Glaciecola nitratireducens: GNIT_2825
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Entry
GNIT_2825 CDS
T01632
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
gni
Glaciecola nitratireducens
Pathway
gni02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gni00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GNIT_2825 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gni03021
]
GNIT_2825 (rpoD)
Transcription machinery [BR:
gni03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GNIT_2825 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AEP30922
UniProt:
G4QMH0
LinkDB
All DBs
Position
3133068..3134894
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AA seq
608 aa
AA seq
DB search
MQSKQSQIKLLIAKGKEQGYLTFAEVNDHLPQDIVDSDQIEDIIRMINDMGIKVSESAPD
ADELLMQDSSADEDVAEAAAQALATVESEIGRTTDPVRMYMREMGTVELLTREGEIEIAK
RIEDGINQVQCSVAEYPEAITYLLDQWDLFEAEEIRISDIIIGFVDPNEQDVAPTATHIG
SELSQEELDDEDDDADDEDEEEEDTGVDPELAREKFTALRNQYNKVMSVIEVKGRSHKAS
RKEIHELSEVFKEFRLIPKQFDRMVKNMRGMMDRVRIQERLVMKYCVMNAKMPKKDFIKA
FAGNETSIDWLYKALEGKAPYVEKLLEFKEEIERSVSKMNAVEAETGLIIPDIKDINRRM
SIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY
KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELSE
RMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTIIQPLDSATGGSLKNATQ
EVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE
QLRSFLDE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtgcagagcaagcagtcccagataaaactcctgattgccaaaggtaaagaacaaggttac
ttgacctttgccgaagtaaacgatcacctccctcaagacattgtagattctgatcagata
gaagatatcattcgcatgatcaacgacatggggattaaagtctcggagtctgctccagac
gctgacgagttgcttatgcaagattcgtctgcggatgaagacgtagctgaagctgccgcg
caagcgctagcaacagttgagagtgaaatcggtcgcacaactgaccccgttcgtatgtat
atgcgagaaatgggcacagttgagctattaacacgtgaaggcgaaattgaaatcgcgaaa
cgcattgaagatggtattaaccaagttcagtgctctgttgcagaatatccagaagcaatt
acctatttgcttgatcaatgggacttgttcgaagctgaagaaattcgaattagcgatatc
atcatcggctttgtcgaccctaacgaacaagacgtagctccaaccgcaacgcatattggt
tcagaattgtcacaagaagaacttgatgatgaagatgacgatgctgacgatgaggacgaa
gaagaggaagacacaggcgttgaccctgagttagccagagaaaaattcaccgcattgcgt
aatcaatacaataaagtaatgagcgtaattgaagtgaaaggacgctcgcataaagcatca
cgcaaagaaattcatgagttgagtgaagtattcaaagagttccgtttaatacctaagcaa
ttcgaccgcatggttaagaatatgcgcggaatgatggatcgtgttcgtattcaagagcgc
ttggtcatgaagtactgcgtcatgaatgcaaaaatgccgaagaaagattttatcaaggcg
tttgcaggtaatgaaacaagtatagattggttgtacaaagcacttgaaggcaaagcacct
tacgttgaaaagcttcttgagtttaaagaagaaattgagcgtagtgttagcaaaatgaat
gctgttgaagctgaaactggcttaattatccctgatattaaagacatcaatcgcagaatg
tcgattggtgaagcgaaagctcgccgcgccaagaaagagatggttgaagcaaacttacgt
ttggtaatctcaatagcgaagaaatacacgaaccgcggtttacaattcttggatcttatt
caagaaggtaacatcggtttgatgaaagccgttgataaatttgaataccgtcgtggttat
aagttttcaacgtatgctacttggtggatacgtcaggcgattacgcgctctattgctgac
caagcaagaacgatccgtattcctgtgcacatgattgaaacgatcaacaagttgaatcgt
atttcacgtcaaatgcttcaagaaatgggtagagagccaacaccagaagagttgtcagaa
cgcatgttaatgccagaagacaaaatccgtaaagtgcttaaaattgccaaagagccaatc
tccatggaaacaccaattggtgatgatgaagattcgcacttaggggatttcatagaggac
agcaccattatacagcctcttgactctgccactggcggtagcttgaaaaacgcgactcaa
gaagtgctggctggcctaacagctcgcgaagcgaaagtactgagaatgcgatttggcatt
gatatgaacaccgaccatactttggaagaagtaggcaaacagttcgacgttacacgtgaa
cgtatcagacagatcgaagcgaaggcattgcgtaaactccgtcaccctagccgctctgag
caactgagaagcttcttagacgaataa
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