Geomonas nitrogeniifigens: KP003_20190
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Entry
KP003_20190 CDS
T07937
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gnt
Geomonas nitrogeniifigens
Pathway
gnt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gnt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KP003_20190 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gnt03400
]
KP003_20190 (ligD)
Enzymes [BR:
gnt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KP003_20190 (ligD)
DNA repair and recombination proteins [BR:
gnt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KP003_20190 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QXE86637
LinkDB
All DBs
Position
complement(4557999..4560659)
Genome browser
AA seq
886 aa
AA seq
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MGLEEYRRKRDLNRTPEPAGKVERSVGTLRFVVHKHAASHLHYDFRLEINGVLKSWAIPK
GPSLDPSVKRLAMMVEDHPYEYGDFEGVIPKGNYGAGEVIIWDAGTFHAAATKEPELSLQ
LLREGLQKGDLKFVLHGEKLNGEFALVRIKGDKGNSWLLIKKKDQFAGTEDVTLQERSVV
SNATIEDVRAGRMPRRPAAQVQDEPAGTDSPASPHPPSPSSPGSPGSPGSAGSASSTVRG
GAPMPHQLPPMLATSAAESFNDPDWLFEIKLDGYRALAEVSGSEVALYSRNNLSFNKKFS
TVVTALASLGVEAVLDGEVVALDDSGRSSFQLLQNYRRTGRGNIAYFVFDLLYLNGVDLR
NQPLLARKERLRALLPDLPDLPDIRYSDHVMEYGRQFFELVRQNNLEGLLAKRATSTYQA
GRRSKDWLKIKVRLQQEAVICGFTQPRRSRKGFGALVLGVFEEDRLVCIGFAGGGFDEAG
LMEMYHLLQPLAQEKSPFQQPVASDMPITWVRPELVCEVEFSEWTAENVMRHPIYLGLRE
DKDPKSVVREMVVSPPVTPQPAAASEPPSLPRQADRKKGVSGKKGAEELLILGGHRLELS
NLDKVFWPDQGYTKGDVISYYRAMAHAMLPHLVDRPESLYRTPNGITMPGFFQKEAGELP
PSWITTREIYSKHVDKNIKFFVCQDEATLVYMANLGCIEINPWLSRLQHLDYPDYFVIDL
DPEDIPFAKVIETALAVREVLDLAGAIGFPKTSGATGIHIYVPLGAKYDYDAAGEFARVI
ATLVHYKVPDFTSILRSPKLRQKKVYLDFLQNKPGQTLAAPYSIRPRPGATVSAPLRWEE
VKPGLDPGQFTIATMPRRLEHMGDLFAGVLGPGIDLEQCIENLERR
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgggactggaagagtatcggcgcaagagggacctgaacaggacgcctgagcccgccggg
aaggtggaaaggtccgtcgggacgctgcgcttcgtggtccacaagcacgccgcctcccac
ctgcattacgactttcgcctggagatcaacggggtgctgaagagctgggcgattcccaag
ggcccctcgctcgatccctccgtgaagcggctggccatgatggtggaggaccacccttac
gagtacggcgatttcgaaggagtcattccgaaagggaactacggcgccggcgaggtgatc
atctgggacgccggcaccttccatgccgcggcgacgaaggagccggaactaagtctccag
cttttgcgcgaggggttgcagaagggggacctgaagttcgtcctgcacggggagaagctg
aacggagaattcgccctggtgcggatcaagggggacaaggggaactcctggctcctgatc
aagaaaaaggatcaatttgccgggaccgaggacgtgacgctccaggaacgttccgtggtc
agcaacgccaccatcgaggacgtgcgcgccggcaggatgccacgacgccccgccgcgcag
gtgcaggatgagccggcaggcaccgactcaccggcttccccccaccccccctcccccagt
tcccccgggtctcccgggtctcccgggtccgccgggtccgcttcgtccaccgtgagaggc
ggcgcccccatgccgcaccagttgccccccatgctggccacctccgccgccgagtccttc
aacgaccccgactggctcttcgagatcaagctcgacggctaccgcgcccttgccgaggtc
tccggcagcgaagtcgctctctactcgcgcaacaacctctccttcaacaaaaaattttcc
accgtggttacggcgctcgcctccctcggtgtcgaggctgtcctggacggcgaggtggtg
gcgctggacgacagcggccgctcctccttccaactgctgcaaaattaccggcgaaccggg
cgcggcaacatcgcctacttcgtcttcgacctcctctacctaaacggcgttgacctgcgc
aaccagccccttttggcccgcaaggagaggctgcgcgccctccttcccgaccttcccgac
ctgcccgacatccgctacagcgaccacgtcatggagtacggcaggcagttcttcgaactg
gtgcgccagaacaacttggaggggctccttgccaagcgcgcgaccagcacctaccaggcg
ggaagaaggagcaaggattggctgaaaatcaaggtgcgactgcagcaggaggcggtcatc
tgcggctttacccagccgcgccgcagccgtaaaggattcggcgcgctggtgctcggggtc
ttcgaggaagaccggctggtctgcatcggctttgccggagggggatttgacgaggcgggg
ctcatggagatgtaccacctgctgcaaccgctggcgcaggaaaagtcccctttccagcag
ccggttgcgtcggacatgcccatcacctgggtaaggccggagctggtctgcgaggtggag
ttttccgaatggaccgccgagaacgtgatgcgccaccccatctacctggggctcagggag
gacaaggacccgaagagcgtggtgcgcgagatggtcgtttcgcccccggtgacgccgcag
cccgccgccgcttcggaacccccttccctcccgcgccaggccgaccggaagaaaggggtg
agcggaaagaaaggggcggaagagttgctgatactcggcggccaccgcctcgagctttcc
aacctggacaaggtgttctggccggaccaggggtacaccaagggggacgtcatcagctac
taccgggccatggcccacgccatgctcccccacctggtcgaccgtccggaatcgctctac
cgcacgcccaacggcatcactatgccgggctttttccagaaggaggcgggcgagctcccc
ccttcgtggatcaccacccgggagatctactcaaagcacgtcgacaagaacatcaagttc
ttcgtctgccaggacgaggccaccctcgtctacatggcgaacctcggctgcatcgagatc
aacccctggctgtcacgcctgcagcacctcgactacccggactacttcgtgatcgacctc
gaccccgaggacatccctttcgcaaaggtgatcgagacggcgttggcggtccgggaggtc
ctggacctggccggcgccatcggttttcccaagacctccggcgctaccggcatccacatc
tacgtgccgctgggggccaagtacgactacgacgccgcgggcgagttcgccagggtcatc
gccaccctggtgcactacaaggtccccgacttcaccagcatcctgcgcagcccgaagctg
cgccagaaaaaggtctacctcgacttcctgcagaacaagccgggacagaccctggcggcg
ccgtacagcatccgcccaaggccgggggcaaccgtttcggccccgctcaggtgggaggag
gtgaaacccggtctcgaccccggccagttcaccatcgccaccatgccacggcgactggaa
cacatgggcgacctgttcgcaggggtgttggggccggggatcgacctggagcaatgcatc
gagaacctggagcgccggtag
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