Geodermatophilus obscurus: Gobs_0915
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Entry
Gobs_0915 CDS
T01163
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gob
Geodermatophilus obscurus
Pathway
gob03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Gobs_0915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gob03400
]
Gobs_0915
Enzymes [BR:
gob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Gobs_0915
DNA repair and recombination proteins [BR:
gob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Gobs_0915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
UB2H
AroM
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADB73677
UniProt:
D2S934
LinkDB
All DBs
Position
972352..975891
Genome browser
AA seq
1179 aa
AA seq
DB search
MTLRGVLDVVLTDPGMARVVAAAGNAELAVTAPPSVQPLVATALSTARGGAGVPVLVVTA
GERDADAVADQLRCFLPDRRTEVFPAWETLPHERLSPRADTVGRRLAVLRDLTHPGANGT
IDVLVAPVRSVLQPLAPGLGDLVPVELRPGDTAELDDVARALADAAYTRVELVEKRGEFA
VRGGLLDVFPPTEPHPVRVEFWGDEVDELRYFSAADQRSLDERPERLWAPPCRELLLTDQ
VRERAAALAAEHPGLLEILGRLAEGIAVEGMESLTPALIGDAHMQLLTDLVPAGTHVLVC
DPERVRSRAADLVRTAEEFLAASWATAAEAGEAPIDLGASSFRALAEIEAAARGRGLPWW
TTGAFTLAAEEDDTHVTLDATTVERFSGDVPRAIEQLRDWSRQGWRVVVTFAGPGPAQRA
ADQFTEADLGTRLVPDIAGAPDPRLTHVTQGSLETGFALPGVGLALLTEHDLTGQRGTSM
RDAVKMPARRRNAVDLVQLQPGDLVVHEHHGIGRYIEMVSRTVNGGQRDYLIVEYAPSKR
NQPPDRLFVPTDALDQLTRYVGGEAPALSKLGGADWQKTKGQARRAVKQIAAELIRLYSA
RMATRGHAYGPDTVWQRELEDAFPFQETPDQLAAIDEVKTDMQHPVPMDRIICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLANQHFKTFSERFAQFPVTVQVLSRFQSEAESRE
ILRRLADGEIDVLVGTHRLLQPTTRFKDLGLVIVDEEQRFGVEHKEYLKTMRTAVDVLSM
SATPIPRTLEMSLTGIREMSTILTPPEERHPVLTYVGAWDDKQMAAAIRRELLRDGQVFV
IHNRVQSIDKAAAKIRNLVPEARVAVGHGQMREHELERIMVGFWEKEYDVLVATTIVESG
LDIPNANTLIVDRADTFGLSQLHQIRGRVGRGRERAYAYFTYDPSRPLTETSVDRLTTIA
HNTDLGAGMAVAMKDLEIRGSGNLLGGEQSGHIAGVGFDLYVRLVGEAVTDYRAQLNGEE
PPAEPADVRVDLPVDAHLPHDYVPGERLRMEAYRKVASVQSDEQAQAVLDELTDRYGTPP
APVLNLLAVARFRAAVRQWGITEVSMQGRAIRISPVPLAESKQMRLARLADGATYKAAVD
TISLKVPVGPDRRTPLRDVALLDHLRSLLAALLEQPVAA
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
gtgaccctccgcggcgtgctcgacgtcgtcctcaccgaccccgggatggcccgcgtcgtg
gccgccgcggggaacgcggagctggcggtcaccgcgccgccgtccgtgcagccgctggtc
gccacggctctctccacggcgcggggcggcgccggcgtgcccgtcctcgtcgtgacggcg
ggggagcgggacgccgacgcggtcgccgaccagctgcgctgcttcctgcccgaccggcgc
accgaggtcttcccggcctgggagacgctgccgcacgagcggctctccccgcgcgcggac
accgtcggccggcggctagcggtgctgcgcgacctgacccatcccggcgccaacggcacg
atcgacgtcctggtcgcgccggtgcgcagcgtgctgcagccgctggccccgggcctgggc
gacctcgtcccggtcgagctgcggcccggggacaccgccgagctcgacgacgtcgcccgc
gcgctcgctgacgctgcctacacccgcgtggagctggtcgagaagcgcggcgagttcgcc
gtccgcggcggcctgctcgacgtcttcccgcccaccgagccgcacccggtccgcgtcgag
ttctggggcgacgaggtcgacgagctgcgctacttctccgccgccgaccagcgctcgctc
gacgagcgcccggagcggctgtgggcgccgccgtgccgcgagctgctgctcaccgaccag
gtccgggagcgggcggccgcgctggccgccgagcaccccgggctgctggagatcctcggc
aggctcgccgaggggatcgccgtcgagggcatggagtcgctgaccccggcgctcatcggg
gacgcgcacatgcagctgctcaccgacctggtgccggccggcacgcacgtgctggtctgc
gaccccgagcgggtgcgcagccgtgccgcggacctggtgcgcaccgccgaggagttcctc
gccgcctcctgggcgaccgccgccgaggccggcgaggcgcccatcgacctcggtgcgtcg
tccttccgcgccctggcggagatcgaggccgccgcgcgcggccgcggtctgccgtggtgg
acgacgggcgcgttcacgctcgcggccgaggaggacgacacccacgtcaccctcgacgcc
acgaccgtcgagcgcttctccggcgacgtcccgcgtgccatcgagcagctgcgcgactgg
tcccggcagggctggcgggtcgtggtgaccttcgccggtcccggccccgcccagcgcgcc
gccgaccagttcaccgaggccgacctcggcacccggctggtgcccgacatcgccggcgcg
ccggacccgcggctgacccacgtcacccagggcagcctggagaccggcttcgccctcccg
ggtgtggggctggcgctgctcaccgagcacgacctcaccgggcagcgcggcacctcgatg
cgcgacgcggtgaagatgcccgcgcgccggcgcaacgccgtcgacctggtgcagctgcag
cccggcgacctcgtcgtccacgagcaccacggcatcggccgctacatcgagatggtcagc
cgcaccgtcaacggcgggcagcgcgactacctgatcgtcgagtacgcgccgtcgaagcgg
aaccagccgccggaccggctcttcgtgcccaccgacgccctcgaccagctgacccgctac
gtcggcggcgaggccccggcgctgtccaagctcggcggcgcggactggcagaagaccaag
ggccaggcgcgcagggcggtcaagcagatcgccgcggagctcatccggctgtactcggcg
cggatggcgaccaggggacacgcctacggcccggacaccgtctggcagcgcgagctcgag
gacgccttcccgttccaggagacgcccgaccagctggccgcgatcgacgaggtcaagacc
gacatgcagcacccggtcccgatggaccggatcatctgcggcgacgtcggctacgggaag
accgagatcgccgtgcgggcggccttcaaggcggtgcaggacggcaagcaggtcgccgtc
ctggtgccgacgacgctgctggccaaccagcacttcaagaccttctccgagcgcttcgcg
cagttcccggtgaccgtgcaggtgctgtcccggttccagtcggaggccgagtcgcgggag
atcctgcgccgactggccgacggcgagatcgacgtcctcgtgggcacccaccggctgctg
cagccgaccacccggttcaaggacctcgggctggtgatcgtcgacgaggagcagcggttc
ggcgtcgagcacaaggagtacctaaagacgatgcggacggcggtcgacgtcctgtcgatg
tcggccaccccgatcccgcgcaccctggagatgtcgctgaccggcatccgcgagatgtcg
acgatcctcacgccgccggaggagcggcacccggtgctgacctacgtcggtgcctgggac
gacaagcagatggccgccgccatccgccgcgagctgctccgcgacggccaggtcttcgtc
atccacaaccgggtgcagtcgatcgacaaggccgcggccaagatccgcaacctggtgccc
gaggcccgggtggcggtcggccacgggcagatgagggagcacgagctcgagcggatcatg
gtcggcttctgggagaaggagtacgacgtcctggtcgcgacgacgatcgtcgagtccggc
ctggacatccccaacgccaacacactgatcgtcgaccgggccgacaccttcggactctcc
cagctgcaccagatccgcgggcgggtcggccggggccgggagcgggcgtacgcgtacttc
acctacgaccccagccggccgctcaccgagacctcggtcgaccggctgaccaccatcgcg
cacaacaccgacctcggcgccggcatggcggtggcgatgaaggacctggagatccgcggc
tcgggcaacctgctcggcggcgagcagtccgggcacatcgccggcgtcgggttcgacctg
tacgtgcggctggtcggcgaggcggtcaccgactaccgggcgcagctcaacggcgaggag
ccgccggccgagccggccgacgtccgggtggacctgccggtcgacgcccatctgccgcac
gactacgtgcccggggagcggctgcggatggaggcctaccgcaaggtcgcctcggtgcag
tccgacgagcaggcgcaggcggtgctcgacgagctcaccgaccgctacggcaccccgccg
gccccggtgctcaacctgctcgcggtggcccgcttccgggccgccgtccggcagtggggg
atcaccgaggtgtcgatgcagggccgggcgatccggatctcacccgtcccgctggcggag
tccaagcagatgcggctggcccggctggccgacggcgccacctacaaggccgccgtcgac
accatctcgctcaaggtgccggtcggcccggaccggcggacgccgctgcgggacgtggcg
ctgctggaccatctgcggtcgctgctggccgccctcctcgagcagcccgtcgccgcctga
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