Gordonia sp. YC-JH1: CXX93_17150
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Entry
CXX93_17150 CDS
T05256
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
goc
Gordonia sp. YC-JH1
Pathway
goc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
goc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CXX93_17150 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
goc03400
]
CXX93_17150 (mfd)
Enzymes [BR:
goc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CXX93_17150 (mfd)
DNA repair and recombination proteins [BR:
goc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CXX93_17150 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AUH69727
LinkDB
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Position
complement(3694405..3697995)
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AA seq
1196 aa
AA seq
DB search
MSTPSAPRPSLSGLTSFAFRDAAFGLLRERVGETRLDITAPDAARPLVVAQLAEISENPV
LVVTANGREADDLTTELSELLPSGPNGTSVVAQFPSWETLPHERLSPSADTVGARLAVLS
RLADPAVSPLRVVVATVRSLVQPMAPGLGAMRAVTLTEGTEAQFDGLIEKLVEMAYERVD
MVGARGEFAVRGGILDIFPTTADYPVRVEFWGDEVTDIRAFSVADQRTQPEIDTSVVQIH
PCRELVLTAEVRDRAAELASTVEDESLREILTKLSEGIPVEGMEALIPALVDGRMQMLTE
VMPDGTRVLVLDPEKVRTRAVDLARTGEEFLEASWNAAALGAAAPVAAGEPSIDLSASAY
RSVGDVERATVEAGKPWWTMSPLSAGSGEELELDLQPGPAPHGDPAELDEFMTSLRAQVA
SGGRAALIAAGRGTAMRFVDRLGEAEVPARLVEPGDELPADAVGVFHGTLRRGLVCPSAR
LVIATEADVTGARVVGVKDGRRLPAKRRNQVDPLALSAGDLVVHDQHGIGKFVEMIERTV
SGARREYLVIEYAPGKRGQPGDRLYVPMDALDQLSRYVGGEQPGLSKLGGSDWANTKRKA
RKAVREIAGELVQLYAARHAAPGFAFSPDTPWQREMEDAFDYTETVDQMTVIGEVKADME
KPVPMDRVVVGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTILAGQHLQTFTERMAGFP
VTVRGLSRFTDPAESKEIIAQMASGEVDVVIGTHRLLQTGVRWKDLGLVIVDEEQRFGVE
HKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTYVGAYSDKQ
VAAAIRRELLRDGQVFYVHNRVSTIDKTAKHLANMIPEARVVVAHGQMGEEQLERTVQGF
WDREYDVLVCTTIIETGLDISNANTLIVDRAENFGLSQLHQLRGRVGRSRERGYAYLLYS
PDKPLTETAYDRLATIAQNNELGAGMAVALKDLELRGAGNVLGAEQSGHVAGVGFDLYVR
LVGEAVEAYRAAADGKAVATEENVEVRIDLPVDAHIPVEYVEADRLRLEAYRKLASATSD
DDVDEVMSELTDRYGEPPVETQRLAAIARLRLRCRERGIAEVGLAGQSIRISPMLLLDSQ
QVRLARMYSSASYRAATHMVTLPIPRTGGVGSPRLRDTELVDYLVTFLQTIAPLES
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgaccccctctgcgccgcgtccctccctgtccgggctgacctccttcgcgtttcgt
gatgcggccttcggtttgctgcgggaacgagtgggcgagactcgcctcgacatcacggca
ccggacgcggcccggccgctggtggttgcgcaactggccgagatctccgagaaccccgtc
ctcgtcgtgaccgccaacggtcgggaggccgacgacctcacgaccgaactgtcggaactg
ctgccgtcggggcccaacgggacgtcggtcgtcgctcaattcccgtcgtgggagacgctg
ccgcacgagcggctctcgcccagcgccgacacggtcggtgcccggctcgcggtgctcagt
cgactggccgacccggcggtgtccccgttgcgcgtcgtcgtcgcgaccgtccgttccctc
gtgcagccgatggctcccgggctcggagcgatgcgcgcggtcacgctcaccgaaggcacg
gaggcgcagttcgacggtctgatcgagaagctcgtcgagatggcctacgagcgcgtcgac
atggtcggtgcccgcggcgagttcgcggtgcgcggcggcatcctcgacatcttcccgacc
accgccgactacccggtgcgagtggagttctggggcgacgaggtgaccgacatccgcgcg
ttctccgtcgccgaccagcggacgcagccggagatcgacacgtcggtggtccagattcat
ccgtgccgagaactggtgctgaccgcggaggtccgggaccgggccgccgaactcgcgtcg
acagtcgaggacgagtcgctgcgcgagattctgaccaaactgtcggagggcattcccgtc
gagggaatggaagcgctgatcccggcactcgtcgacggccggatgcagatgctcaccgag
gtgatgcccgacggcactcgggtactggtcctcgatccggagaaggtgcgcacccgtgcc
gtcgatctggcgaggaccggcgaggagttcttggaggcgtcgtggaacgccgcggcgctg
ggggcagcggcgcccgtggccgcgggcgaaccctccatcgacctgtcggcgagtgcctac
cgcagcgtcggtgacgtcgaacgtgcgaccgtggaggcgggcaaaccgtggtggacgatg
agtccgctctcggcgggatcgggcgaggagctcgaactcgatctgcagcccgggccggcg
ccgcacggcgaccccgccgagctcgacgagttcatgacgtcgttgcgcgctcaggtcgcc
tcgggcggtcgtgcggcgttgatcgccgccggccggggcactgcgatgcgattcgtcgac
cgtctcggtgaggccgaggtcccggcccggctcgtggagccgggcgatgagttgccggcc
gacgcggtcggcgtcttccacggcacgctgcggcgcggactggtctgcccgtcggcgcgt
ctggtgatcgccaccgaggcggacgtcaccggcgctcgcgtcgtcggtgtgaaggacggg
cggcgactgccggccaagcggcgcaatcaggtcgacccgctggcgttgagcgccggtgac
ctggtggtgcacgaccaacacggcatcggcaagttcgtcgagatgatcgaacgcacggtc
tccggtgcccggcgcgagtacctcgtgatcgagtacgcgcccggcaagcggggacagccg
ggcgaccgcctgtacgttccgatggacgcgctcgaccagttgtcgcgctacgtcggcggc
gagcagccggggctcagcaagctcggcggttccgactgggccaataccaagcgcaaggcg
cgcaaggcggtccgggagatcgcgggcgaactggtgcagctgtacgccgcgcggcatgcg
gcaccgggtttcgcgttcagccccgacaccccgtggcagcgggagatggaggacgccttc
gactacaccgagaccgtcgaccagatgacggtgatcggcgaggtcaaggccgatatggag
aagccggtcccgatggaccgggtggtggtcggcgacgtcggttacggcaagaccgagatc
gcagtccgcgccgcgttcaaggccgttcaggacgggaagcaggtcgcggtcctggtaccg
acgacgattctcgccgggcagcacctgcagaccttcaccgagcggatggcgggcttcccg
gtcaccgtgcgcgggttgtcgcggttcaccgatccggccgagtcgaaggagatcatcgcg
cagatggcctccggtgaggtcgacgtcgtcatcggcacgcatcggctgctgcagaccggc
gtccgatggaaagacctcggtctggtgatcgtggacgaggagcagcgcttcggtgtggag
cacaaggagcacatcaaagcgctgcgcacccacgtggacgtgctcaccatgtcggcgaca
ccgatcccgcgcaccctcgagatgtcgatggcgggtatccgcgagatgtcgaccatcctc
actccgcccgaggaacggcacccggtcctgacgtatgtcggcgcatactccgacaagcag
gtcgcggcggccatccggcgcgagctgctgcgcgacggtcaggtgttctacgtgcacaat
cgcgtctcgaccatcgacaagaccgccaagcatctcgcgaacatgattcccgaggcccgg
gtggtggtcgcgcacgggcagatgggcgaggagcaactggaacgaaccgtccagggcttc
tgggaccgcgagtacgacgtcctcgtgtgcaccacgatcatcgagaccgggctcgacatc
tcgaacgccaacaccctgatcgtcgaccgtgcggagaacttcgggctctcgcagctgcac
cagctgcgcgggcgcgtcgggcgaagccgggagcgcgggtacgcgtacctgctgtacagc
ccggacaagccgctgaccgagacggcctacgaccggctcgcgaccatcgcccagaacaac
gaactcggtgccggcatggcggtggcgctcaaggatctcgagctgcgcggtgccggcaac
gtcctcggcgccgagcagtccgggcacgtcgcgggtgtcggcttcgacctctacgtgcgg
ttggtcggcgaagcggtcgaggcgtaccgagccgcggccgacggcaaggcagtggcgacc
gaggagaacgtcgaggtgcgcatcgacctgccggtggacgcgcacatccccgtcgagtac
gtggaggcggaccggctcaggctggaggcataccgcaagctggcgtcggccaccagtgac
gatgacgtcgacgaggtgatgagcgaactgaccgaccgctacggtgagccgcccgtcgag
acgcagcgtctcgcggcgatcgcacgtctgcggctccggtgccgcgaacgcggtatcgcg
gaggtcggtctggccggtcaatccatccggatctcaccgatgcttctgctcgacagccag
caggtccggctcgcgcgcatgtactcgtcggcgagctaccgtgccgcgacccacatggtg
acactgccgatcccgcgtaccggcggcgtcggttccccccgactccgggacacagagctc
gtcgactatctcgtcacgttccttcagacgatcgcgccgctggagtcgtag
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