Gordonia sp. 135: GKZ92_21520
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Entry
GKZ92_21520 CDS
T06305
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
god
Gordonia sp. 135
Pathway
god03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
god00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GKZ92_21520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
god03400
]
GKZ92_21520
Enzymes [BR:
god01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GKZ92_21520
DNA repair and recombination proteins [BR:
god03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GKZ92_21520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QGP89989
UniProt:
A0A6I5ZK47
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Position
4762619..4765015
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AA seq
798 aa
AA seq
DB search
MAGGENLEVDGRRISITNLSKVLYPATGTRKYDVIDYYSRIADVMLPHLRNRIVTRKRWP
NGVESTPFFEKDMPDSAPDWVRRYGIQHSERVIEYALAEDRATLVWLAQMAALEIHVPQW
QLPIGPDGERMANRIVFDLDPGPRVPLHETAAVAVEIRNWLGGTTTYPVTSGGKGIHIYA
RLPKPVSSEAARKVAREVANEFARQNSDFITANMSKKIRDDKVFIDWSQNNASKTTLSPY
SLRGREQPWVAAPRTWDEIEDPKIAQLLYTEVLDRVADVGDLLGGLDAPYDDDPATDADK
HGAEEPDAEDSQAGQIINLREYRRKRDESKTPEPFGDENHRQRLRESDEDADTESETGPR
EPIFVIQEHHARRLHYDFRLEHDGVLVSWAVPKNLPTDPDQNRLAVQTEDHPMDYADFEG
DIPAGEYGGGHVSIWDKGTFELEKWREKEVIVRLHGEKVQGRYALIRTGDKNWLAHLMTD
EPRPIVPDSLTDPRPMLATDDPIDKLNERDWAFEGKWDGYRLLVRSIGGEFRLTSRSGID
MTKDFPEFAGIADDLGLMDVVLDGEAVAIDSTGRTNFTLFTSRKHTEEQYTLKLHLFDIL
YLNGTSLLRKPWSVRRELLEELATAFRRSPYVDVPPLLPAPASAAIEYSREHNLEGVVAK
RRDSVYQQGRRSTKWLKHKNWSDIEVVVGGYRPGRGNRSHTIGSLLLGLPEETGLRYVGR
VGTGFTDAQLRALAEELEPLEISRSPFLDKLDRPIASSAVWVLPKIVGEVRFMDWTTAGH
LRHPSWRGIRRDKLPGDL
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcggagagaacctggaggtcgacggccgccggatctcgatcaccaatctctcc
aaggtgctctatccggcgaccgggacccggaagtacgacgtcatcgactactactcgcgc
atcgccgacgtcatgctgccgcatctgcggaaccggatcgtcacccgcaaacgctggccc
aatggtgtcgagtcgacgccgttcttcgagaaggacatgcccgacagtgcacccgactgg
gttcgccggtacggaatccagcacagcgagcgggtcatcgagtacgcactggccgaggat
cgcgccacgctcgtgtggctggcgcagatggcggcgctggagatccacgtcccgcagtgg
caactaccgatcggccccgacggcgagcgcatggccaaccgcatcgtcttcgatctcgac
cccggtccgcgggtccccctgcacgagaccgcggccgtggcggtggagatccggaactgg
ctgggcggcaccaccacctatccggtgaccagcggcggcaagggaatccacatctacgcc
cgactgcccaagccggtgagctccgaggccgcacgaaaggtggctcgcgaggtggccaac
gagttcgcccggcagaacagcgatttcatcaccgccaacatgtccaagaagatccgcgac
gacaaggtcttcatcgattggagccagaacaacgcctccaagaccacgctgtctccgtac
tcgttgcgcgggcgcgagcaaccgtgggtcgccgcgccccgcacctgggacgagatcgag
gacccgaagatcgcccagctgctctacacagaggtcctcgaccgcgtcgccgacgtcggc
gatctcctcgggggtctcgacgcgccgtacgacgacgatccggccaccgacgccgacaaa
catggcgccgaggagcccgacgccgaggactcgcaggcgggtcagatcatcaatctgcgg
gagtaccgtcgtaaacgggacgagtccaagacacctgaacccttcggcgacgagaaccac
cggcagcgcctgcgcgaatccgacgaggatgccgacaccgaatccgaaaccggcccgcgc
gaaccgatcttcgtcatccaagaacaccacgcgcggcgcctccactacgacttccgtctc
gaacacgacggggtgctggtctcatgggccgtcccgaagaacctgccgaccgatccggac
cagaaccggctcgcggtccagaccgaggaccatccgatggactacgccgacttcgagggc
gacatcccggccggtgagtacggcggtggtcacgtatcgatctgggacaagggcactttc
gagctggagaagtggcgggagaaagaggtcatcgtccgcctgcacggcgagaaggtgcag
ggccggtacgcactgatccgcaccggggacaagaactggctcgcccacctgatgaccgac
gagccgcgccccatcgtccccgacagcctcaccgatccgcgaccgatgctcgcgaccgat
gatccgatcgacaagctcaacgaacgggactgggcgttcgagggaaagtgggatggttat
cggctcctggtgcggtcgatcggcggcgagttccggctcacgtcccggtcgggaatcgac
atgacgaaggacttccccgaattcgcgggcatcgccgacgatctcggactgatggacgtc
gtcctcgacggcgaggcggtggccatcgactcgaccggccggacgaacttcacgctgttc
acgtcgcggaagcacaccgaggagcagtacacgctcaaactgcacctgttcgacatcctc
tatctcaacgggacgtcgttgctgcggaaaccgtggtccgtacgacgcgaactcctcgag
gaactcgcgaccgcgttccgccggtcgccgtatgtcgatgtgccgccgctgcttccggcg
cccgcgagcgcggcgatcgagtacagccgcgaacacaacctcgaaggtgttgtcgccaaa
cgacgcgactcggtgtatcagcagggccgacgctccaccaagtggctcaagcacaagaac
tggagcgacatcgaggtggtggtcggcggttaccggcccgggcgcggcaaccggtcacac
accatcgggtcgttgttgctcggactgcccgaggagaccggactgcgctacgtgggacgc
gtcggcaccgggttcaccgacgcgcagttacgggcgctagccgaagaactcgagccgctg
gagatctcgcggtcaccgttcctcgacaaactcgaccggcccatcgcgtcgagcgcggtc
tgggtgctgcccaagatcgtcggcgaggtgcgcttcatggactggaccaccgcgggccac
ctacgccacccgagctggcgcggcatccgccgggacaaactccccggagatctctga
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