Gluconobacter oxydans H24: B932_2470
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Entry
B932_2470 CDS
T02348
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
goh
Gluconobacter oxydans H24
Pathway
goh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
goh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B932_2470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
goh03400
]
B932_2470
Enzymes [BR:
goh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B932_2470
DNA repair and recombination proteins [BR:
goh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B932_2470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
AAA_16
RecG_dom3_C
AAA_22
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AFW02024
LinkDB
All DBs
Position
2468584..2472084
Genome browser
AA seq
1166 aa
AA seq
DB search
MEQNETMIREMPLASFGPTVWGVPDGSVALLLRQRLSEHDGSLLHVARDDAAVASLADML
AYLMPEVEVLRLPAWDCLPYDRVSPNSVIVAERVGTLCRLLEPSKARRIVLTTVHSLLQR
VPPRSAFKGQSISVATGEMLDQSMLIEVLVANGYTRTDTVMEAGEFATRGGIFDLFPSGA
PDPIRLDLFGDEVENIRAFDVGTQRSTEKLARFELRPVSEFSLGPDSISRFRTGWRDTFG
PTAASDTIYENVSDGRRYPGLEHYLPLFHDGDGHQMETLLDYLPDAAVSFDSHAPDILKA
RLDMIADHYEARRVPVREGEMPYRALPPHRLYLDRHGWDAMLSRIPSVLLNAFAKPDLGD
GIDAGNRPGPLFARAKDGSRDGVFEAFGKQVEDWAKSGRRIYVTAWSRGSRERIAHLLQE
HGLTTESHDDWPSAAGISRGTVGLLVLGLERGFVSDRLCFVSEQDLLGERISRPPRRKKR
GEQFISQVGEIAEGDLVVHQDYGIGRYVGLQTIREGLVAHDYLSIFYDGEQRLLLPVENI
ELLSRFGSEQASVQLDKLGGTAWQARKAKMKSRIRVMAGELIRTAAARAMREAPTLAPAE
GLWDEFCARFPFVETEDQSRAIADVLEDMSSGRPMDRLVCGDVGFGKTEVALRAAFVAAL
SGMQVAVVVPTTLLARQHYRGFVARFEGLPVRIAQLSRMVTPKEATKVREEMADGRLDIV
VGTHALLAKTVSFNRLGLLIIDEEQHFGVAHKEKLKALREDVHVLTLSATPLPRTLQLSL
SGVREMSLIATPPTDRLAVRTFITPFDSVMIREAIQRERFRGGQVFCVLPRLADLDRMAD
RLAEIVPDAKVVQAHGRLTPTELERVMTEFADGKYDILLSTNIVESGLDMPSVNTIIIHR
ADMFGLGQLYQLRGRVGRGKQRGYAYLTWPQTNSLSAASEKRLEIMQTLDSLGAGFTLAS
HDLDLRGAGNLLGDEQSGHIKEVGIELYQQMLEDAVLDLRRERGRKAEEDESWTPNIILG
LPVLIPETYVPDLPVRLGLYRRIASLNGEAEVEAMRAELVDRFGSLPQEVGNLLDVVLIK
RLCREAGVERLEAGPKGMVLQFRKNRFSNPAGLIDWATRKKQSGVKIRPDHKLAVIREMT
NATRIGFAKKVTTVLCKLVRKVEDAD
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaaacgaaaccatgatccgtgaaatgcccctcgcatcctttggtccaaccgtc
tggggcgtaccagatggcagtgtagctcttctgctacgccagcgattgtctgaacatgac
ggatcgcttttacacgttgcccgggacgatgccgctgtggcttcgctggcggacatgttg
gcctatctgatgcccgaggtcgaagtcctgcggctgcctgcctgggactgtctgccttat
gaccgtgtctctccaaattccgtgattgtagcggagcgtgtcggaacgctctgccgcctg
ctggaaccgagcaaggcgcgccggattgttctgacgaccgtccacagccttttgcaacgc
gttccgcctcgctcggcgttcaaagggcagtccatcagcgtcgcaactggcgaaatgctg
gaccagtccatgctcatcgaggtcctggtcgccaatggctacacccggaccgataccgtc
atggaagccggtgaatttgcaacccgtggcggaattttcgatctgttcccgtcgggtgcg
ccggacccgatccgtctcgatctgtttggcgatgaagtcgaaaatattcgtgcttttgac
gtcgggacgcagcgttcaactgaaaagctggcccggttcgaactgcgtcccgtttccgaa
ttctcgctgggccccgacagcatcagtcgcttccggacaggctggcgtgacacgttcggc
ccgactgccgcgtcggatacgatttacgagaacgtttctgacggtcgccgctatccgggt
ctggagcactatctgccgcttttccacgatggcgatggccatcagatggaaacgcttctg
gattatcttccggatgcagccgtcagctttgacagtcatgcaccggatattctgaaagcc
cggctggacatgattgcggaccattatgaggcccgccgtgtgcccgttcgggaaggggaa
atgccatatcgggcacttccgccacatcggctatatctggatcggcatggctgggacgcg
atgctctcccgcataccatctgtgctgctcaacgcttttgcaaaaccagaccttggtgac
ggcattgatgcgggcaatcgtccagggccgcttttcgcacgagccaaggacgggtcgcgt
gatggcgtgttcgaggcgttcggcaagcaggtggaagactgggcaaagtctggccgaagg
atctatgtcaccgcctggagccgcggttcgcgggagcggattgcccatctgcttcaggaa
catggcctgaccacagaaagccatgatgactggccatctgctgcgggtatatcacgcggc
acggttggactactggtgctggggctggagcgcgggtttgtctcggaccggctgtgcttc
gtctccgagcaggatcttctgggtgagcgcatttcccgtccgccccgtcgcaagaagcgt
ggcgagcagtttatttcccaggttggggaaattgcggaaggtgatctggttgtccatcag
gactatggtatcgggcgctatgtgggcttgcagaccatccgcgaaggtctggtagcccat
gattacctttccattttctacgatggagagcagcggcttcttcttccagtcgagaatatc
gagcttctgagccgattcggctctgagcaggccagtgttcagctcgacaagctgggcggc
acggcctggcaggcgcgtaaggccaagatgaaatcccgcatccgcgttatggcgggtgaa
ctgatccggacggccgcggctcgtgcgatgcgtgaagcaccgacgctggcacctgctgaa
ggcctgtgggacgaattctgtgcccgtttcccgtttgtggaaacggaagatcaatcccgc
gccattgcggatgttctggaagatatgagttccgggcgaccgatggatcgtcttgtttgc
ggtgacgtcggcttcggcaagacggaagtggcgctgcgtgcggccttcgtggcagcacta
tcggggatgcaagtcgccgttgtcgttccgacgacgttgctggcgcgtcagcattaccgg
ggttttgtcgcgcgtttcgaaggactgccagtccggattgctcagttgtcgcgcatggtg
acacccaaggaagcgacgaaggttcgcgaggagatggccgatggccgtcttgatattgtt
gtcggcacacatgcgcttctggccaagaccgtgtcgttcaatcgccttggcctgctcatt
atcgatgaagagcagcatttcggtgtggctcataaggagaagctcaaggccctgcgtgaa
gacgtgcacgtcctgacgctgtccgccacgccattgccgcgtacgctccagctttctctg
tctggcgtgcgtgaaatgagcctgattgccacgccaccgacggaccgcctggctgtccgc
acgttcatcacaccgttcgatagcgtcatgatccgcgaggccattcagcgtgagcgtttc
cggggcggacaggtcttctgtgtcctgccgcgtctggcggatctggatcggatggcagac
cgtctggccgagatcgtgccggatgccaaggttgttcaggcccatggtcgcctgacacca
accgaactcgaacgtgtcatgaccgaattcgcggatgggaagtatgacatcctgctttcc
acaaatattgtggaaagcggattggatatgcccagcgtgaatacgatcatcatccaccgg
gcggatatgttcgggctagggcagctttaccagcttcgcgggcgtgtggggcgtggcaag
cagcgtggctatgcgtatctgacctggccgcagacgaattcgctctcggcagcgtccgag
aagcgtctggaaatcatgcagacgctggattcgctgggggccgggtttacgctggcgtcc
catgatctggatctgcggggtgctggtaatctgctgggtgatgaacagtccggtcacatc
aaggaagtcggtatcgagctgtatcagcaaatgctggaagacgcggttctggatctgcgc
cgtgagcggggccgcaaggctgaagaggatgagagctggacgcccaatatcattctgggc
ctgcccgtgcttattcctgaaacctatgtcccggatctgcccgtccgcctggggctttat
cgccgtatcgcatctctgaacggggaagcggaagtggaagccatgcgtgccgaactggtg
gaccgtttcgggtcattgcctcaggaagttggtaatcttctggacgtcgtgctcatcaag
cgtctgtgccgtgaagccggggtggagcgtctggaggcggggccgaaagggatggtgctt
cagttccgcaagaaccggttcagtaatcccgccgggctgattgactgggcgacgcgaaag
aagcaatcgggtgtgaagattcgcccggatcataagcttgccgtgatcagggaaatgacg
aacgcaacccggatcggctttgccaagaaggtaacaaccgttctgtgcaaactggtgcga
aaagtggaagacgcggattga
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