Gordonia otitidis: LK459_10700
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Entry
LK459_10700 CDS
T07915
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
goi
Gordonia otitidis
Pathway
goi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
goi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LK459_10700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
goi03400
]
LK459_10700
Enzymes [BR:
goi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LK459_10700
DNA repair and recombination proteins [BR:
goi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LK459_10700
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UEA61231
LinkDB
All DBs
Position
complement(2359391..2361850)
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AA seq
819 aa
AA seq
DB search
MGPAQSLEIDGYTIALTNLGKVLYPATGTRKVEVVDYYTRIADVMLPHLRGRLITRKRWP
NGVESTPFFEKDLPGGVPEWIPRYAVAHSGRTITYAMADSAAVLVWLAQMAALELHTPQW
VVPTGGAQPDPTTPGARGLGDIRANRLVLDLDPGPDVSLEQCAEVALMMHGMLDAAGLRS
YPVTSGGKGIHVYARFDRPVAPDSARTVAREIATTLAAAHPTTITATMSKAQRGGRVFVD
WSQNSASKTTLAPYSMRGREEPWVAAPRTWDELAESGLTQLHFTEVLERATDGDLLDGLD
DPYEPTGGAGTPSEDADEPREGTGSRPVIDLSAYRAKRDASKTPEPFGDDEHRRRRAGST
DDAATSDDTATSDDAAGAASTDPIFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPTDP
DQNRLAVHTEDHPLDYADFSGDIPGGEYGAGHVEIWDHGTYETEKWREKEIIVRLHGERI
QGRYALIKTGDKNWLAHLMSDEPRPILPDSLAHPRPMLATDETVTGLDGRDWAFEGKWDG
FRILLRYIDGDFRLTSRSGIDMTDDFPELRSVTDQLGLIDVVLDGEVVAIDSAGHTNFTL
LTSRNSTSEDYSLKLFLFDILYLNGTSLLRTPWSERRRLLEALGPAVKGSAHVEIPPLLP
GPGSTAVDYSREHGMEGVIAKRRTSTYQQGRRTHLWRKHKNWSDIEVVVGGYRLGRGNRA
GTIGSLLVGLPEETGLRYVGRVGTGFTEASLANLAEELKPLEISRSPFLEKLDRPVASTA
IWVLPKIVGEVRFMDWTTTGHLRHPSWRGIRRDKLPGDL
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgggaccagcgcagagcctggagatcgacggatacacgatcgctctcaccaatctgggc
aaagtgctctatcccgcaacgggcacgcgcaaggtcgaggtcgtcgactactacacacga
atcgccgacgtcatgctcccccatctgcgtggcagattgatcacccgcaaacgatggccc
aacggcgtcgagtcgacgccgttcttcgaaaaggacctacccggcggggttcccgaatgg
attccccggtacgccgtcgcccacagcggccgcacgatcacctacgcgatggcggattcc
gcggcggttctcgtgtggcttgcccagatggcagcgctcgaactccacactccgcagtgg
gtcgtgcccaccgggggtgcgcagcccgatccgacgacgccgggcgccaggggtctcggc
gacatccgcgcgaaccgccttgtcctcgatctcgatcccggccccgacgtgtcgttggaa
cagtgcgccgaggtggctctgatgatgcacgggatgctcgacgccgccgggcttcggtcg
tacccggtcacgagcgggggtaaggggatccacgtctatgcacgtttcgatcgccccgtc
gcacccgattccgcgcggaccgtcgcgcgcgagatagccacgacacttgccgcggcgcac
ccgacgacgatcaccgccacgatgtcgaaggcgcagcgcggcggacgtgtgttcgtcgac
tggagtcagaacagcgcgtcgaagacgactctcgcgccgtactcgatgcgcgggcgcgag
gaaccctgggtcgcagcgccacgcacatgggacgagctcgccgaatccgggttgacgcaa
ctgcacttcaccgaggttctcgaacgcgccaccgacggggatctgctcgacggcctcgac
gatccgtacgagcccaccggcggagccgggacaccgtcagaagacgccgacgaaccgcgc
gagggcaccgggtctcgcccggtcatcgacctcagcgcctatcgcgccaagcgcgacgcg
tccaaaacccccgagcccttcggcgacgacgagcatcgtcgacgtcgcgcggggtccacc
gacgacgcggccaccagcgacgacacggccaccagcgacgacgctgccggcgcggcgtcg
accgatccgatcttcgtgatccaggagcatcacgcgcggcggctgcactacgacttccgc
ctcgaacgtgacggcgtactggtctcctgggccgtgccgaagaatcttccgaccgatccc
gatcagaatcggttggccgtgcacaccgaggaccaccccctcgactacgccgacttctcc
ggcgacatacccggcggcgaatacggtgcgggacatgtagagatctgggaccacggaacc
tacgagacggagaagtggcgcgagaaggagatcatcgtccgcctgcacggcgaacggatc
cagggacgctacgccctcatcaagaccggcgacaagaactggctcgcgcacctgatgagt
gacgagccgcgaccgatcctgcccgacagcctcgcccatcctcgccccatgttggccacc
gacgagaccgtgaccggactcgacgggcgcgactgggcattcgaaggaaagtgggatgga
ttccgaatcctgttgcgctacatcgatggcgacttccgactcacgtcccgatccggcatc
gacatgaccgacgacttcccagaattacgttctgtcacagatcagttgggactgatcgac
gtcgtcctcgacggtgaggtcgttgccatcgactcggcaggacacaccaatttcacactg
ctgacgtcacggaactccacctccgaggactactcgctcaagctgttcctgttcgacatc
ctctatctcaacggcacctccctgctgcgcacaccgtggtcggaacgtcgccggctactc
gaggcgctcggacccgcagtcaaaggctctgcccacgtggagattccgccactgctgccc
ggcccgggctcaaccgccgtcgactacagccgtgagcacgggatggagggtgtgatcgcc
aagcgcaggacgtcgacgtatcagcagggcaggcgaactcatctgtggcgcaagcacaag
aactggagcgacatcgaggtcgtcgtcggcggttaccgcctcggccgaggaaaccgcgcc
ggaaccatcggatcgttgttggtcgggttgcccgaggaaacgggactgcggtacgtgggt
cgggtcggcaccggtttcaccgaggcatcgctggcgaatctcgccgaagagctcaagcct
ctcgagatctcacgcagcccttttctcgagaaactcgaccgccctgtcgcatcgacagcg
atctgggtgttgccgaagatcgtcggcgaagtgagattcatggactggaccacgaccggt
cacctccgacacccgagttggcgcggcatccgccgcgacaagctgcccggcgacctgtga
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