Gordonia insulae: D7316_03013
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Entry
D7316_03013 CDS
T05722
Symbol
ligD_1
Name
(GenBank) Multifunctional non-homologous end joining DNA repair protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gom
Gordonia insulae
Pathway
gom03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
D7316_03013 (ligD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gom03400
]
D7316_03013 (ligD_1)
Enzymes [BR:
gom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
D7316_03013 (ligD_1)
DNA repair and recombination proteins [BR:
gom03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
D7316_03013 (ligD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AZG46412
UniProt:
A0A3G8JPG6
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All DBs
Position
3265795..3268200
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AA seq
801 aa
AA seq
DB search
MVVMAGGDGLEVDGRRIPITNLEKVLYPETGTRKFEVVDYYSRIADVMLPHLAGRPITRK
RWPNGVESMPFFEKDLPASAPDWLERFGEQHSKRVITYPLASSQADLVWFGQMAALELHT
PQWRVPATEGSAPKADRLVLDLDPGPDVPLSQCAEVALMIRDMLSAAGLTAFPVTSGGKG
LHLYARFDRPVSPDAARTVAKQIATSLAASHPAEITATMSKSIRTGKVFIDWSQNSGSKT
TLAPYSMRGRDQPWVAAPRTWDELTDPDIGQLLFHEVLERVAAEGDLLRDLDDAHGPDDT
AGADDTEELDPDAVAAAAATAAPVANPVVSLGEYRRKRDADKTPEPFGDEAHRERGDDTD
IGAGPIFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPDDPGQNRLAVHTEDHPMDYAD
FEGDIPAGEYGGGHVEIWDRGTYETEKWRENEVIVRLHGERVQGRYALIKTGDKNWLAHL
MSDEPRPILPDSLKDPRPMLATDESIENLDGRDWAFEGKWDGYRILVRYIDGDFRLTSRS
GIDMTADFPQLRSIADDLGLIDVVLDGEVVALDASGRTNFTLLAARNTTDDDLTLKLYIF
DILFLNGTSLLRRPWSQRRELLEELAPAFARSTHAEVPPLLDGPGRAAVAHSREQGYEGV
VAKRRTSTYQQGRRTTQWLKQKNWSDIEVVIGGYRPGRGNRSDTIGSLLLGLPEETGLRY
VGRVGTGFTDAQLRSLAAELEPLRIKTCPFVDKLDRPVASSAVWVLPKIVGEVRFMDWTT
TGHLRHPSWRGIRRDKLPGDL
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtcatggcgggtggtgacggtctcgaggtcgacggtcgtcgcataccgatcacc
aacctcgagaaggtgctctacccggagacgggaacccggaagttcgaggtcgtcgactac
tactcgcgtatcgccgacgtcatgctcccgcatctcgccggacgcccgatcacccgcaag
cgctggcccaacggcgtcgagtcgatgccgttcttcgagaaggacctccccgcgtcggca
ccggattggctcgaacggttcggtgaacaacacagcaaacgggtgatcacctatccgctc
gcgtcgtcgcaggccgacctggtgtggttcggccagatggcggcgctcgaactgcacacg
ccgcagtggcgtgtcccggcaaccgaggggtccgcaccgaaggccgaccgcctcgtcctc
gacctcgaccccggccccgacgtcccgctctcgcagtgtgccgaggtcgctctgatgatc
cgcgacatgctgtccgcggccggactcaccgcctttccggtgaccagcggcggcaaggga
ctgcacctgtatgcgcggttcgaccgtcccgtctcaccggacgccgcgcggaccgtcgcc
aaacagatcgccaccagcctggccgcgtcgcatcccgccgagatcaccgcgacgatgtcc
aagtcgatccggaccggaaaggtcttcatcgactggagccagaacagcggctccaagacg
acgctggcgccgtattcgatgcgcggtcgcgatcagccctgggtggccgcgccccgcacc
tgggacgaactcaccgatcccgacatcgggcagctgctcttccacgaggtcctcgaacgc
gttgccgcggagggcgatctgctgcgtgatctcgacgacgcgcacggacccgacgacacc
gccggcgcggacgacaccgaggaactcgaccccgacgcggtcgccgcggcggctgccacc
gctgcccccgtcgcgaatcctgttgtcagccttggtgagtaccgacgcaagcgggatgcg
gacaagacgcccgagccgttcggcgacgaggcccaccgcgagcgcggcgacgacaccgac
atcggtgccggaccgatcttcgtcatccaggagcaccacgcgcgccgactgcattacgac
ttccggctggaacgcgacggcgtgctggtgtcctgggcggtcccgaagaacctgcccgac
gaccccggtcagaaccggctcgcggtgcacaccgaggaccaccccatggattacgccgac
ttcgagggcgacatccccgccggcgagtacggcggcgggcatgtggagatctgggaccgc
ggcacgtacgagaccgagaagtggcgcgagaacgaggtgatcgtgcgtctgcacggcgag
cgcgtgcaggggcgctacgcgctcatcaaaaccggcgacaagaactggctcgcccacctg
atgagcgacgagccgcggcccatcctgccggacagtctcaaggatccgcggcccatgctg
gcgaccgacgaatccatcgagaacctcgacgggcgggactgggccttcgagggcaaatgg
gacggctaccgcatcctggtgcgctacatcgacggcgacttccggctgacgtcgcgctcc
gggatcgacatgaccgccgacttcccgcaactgcgttccatcgcggacgatctcgggctc
atcgacgtggtcctcgacggcgaggtggtggcactcgacgcgagcgggcgcaccaacttc
accctgcttgccgcgcgcaacaccaccgatgacgacctgacactgaagctctacatcttc
gacatcctgttcctgaacgggacgtcgctgctgcgccggccgtggtcacaacgtcgcgaa
ctcctcgaggaactcgccccggcgttcgcgcggtcgacccacgccgaggtgccaccgctg
ctggacgggccgggccgggcggccgtggcgcacagcagggaacagggctatgagggtgtg
gtcgccaagcgtcggacgtcgacgtaccagcagggcaggcgcaccacgcagtggttgaaa
cagaagaactggagcgacatcgaggtggtcatcggcggctaccgccccggccgcggcaac
cgctcggacaccatcggatcattgctgctcggactgccggaggagaccggcctgcggtat
gtcgggcgcgtcggcaccggcttcaccgacgcccaactccgttccctcgccgccgaactc
gagccactgcgcatcaagacctgcccgttcgtcgacaagctggaccgcccggtggcgtcg
agtgcggtctgggtactgcccaagatcgtcggcgaggtccggttcatggactggaccacc
accggccacctgcgccatcccagttggcgtggcatccggcgggacaaactgcccggagac
ctctga
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