KEGG   PATHWAY: gor00020
Entry
gor00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Gordonia sp. KTR9
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gor00020  Citrate cycle (TCA cycle)
gor00020

Module
gor_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gor00020]
gor_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gor00020]
gor_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gor00020]
gor_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gor00020]
gor_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gor00020]
Other DBs
GO: 0006099
Organism
Gordonia sp. KTR9 [GN:gor]
Gene
KTR9_1165  Citrate synthase [KO:K01647] [EC:2.3.3.1]
KTR9_1177  Citrate synthase [KO:K01647] [EC:2.3.3.1]
KTR9_4710  Aconitase hydratase [KO:K01681] [EC:4.2.1.3]
KTR9_2319  Aconitase hydratase [KO:K01681] [EC:4.2.1.3]
KTR9_4027  Monomeric isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KTR9_1831  2-oxoglutarate dehydrogenase, E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
KTR9_0639  putative 2-oxoisovalerate dehydrogenase, dihydrolipoamide dehydrogenase component [KO:K00382] [EC:1.8.1.4]
KTR9_1248  Succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
KTR9_1247  Succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
KTR9_1708  Succinate dehydrogenase / fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KTR9_2891  Succinate dehydrogenase / fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KTR9_1707  Succinate dehydrogenase / fumarate reductase, Fe-S protein subunit [KO:K00240] [EC:1.3.5.1]
KTR9_2890  Succinate dehydrogenase / fumarate reductase, Fe-S protein subunit [KO:K00240] [EC:1.3.5.1]
KTR9_1710  Succinate dehydrogenase / fumarate reductase, cytochrome b subunit [KO:K00241]
KTR9_1709  Succinate dehydrogenase, hydrophobic anchor subunit [KO:K00242]
KTR9_1633  Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain protein [KO:K01676] [EC:4.2.1.2]
KTR9_1632  Fumarase [KO:K01679] [EC:4.2.1.2]
KTR9_2656  Malate dehydrogenase / lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KTR9_2059  putative dehydrogenase [KO:K00116] [EC:1.1.5.4]
KTR9_1743  Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
KTR9_4331  Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
KTR9_4320  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
KTR9_3112  Pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
KTR9_3065  Pyruvate / 2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component,-related enzyme [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gor00010  Glycolysis / Gluconeogenesis
gor00053  Ascorbate and aldarate metabolism
gor00061  Fatty acid biosynthesis
gor00071  Fatty acid degradation
gor00190  Oxidative phosphorylation
gor00220  Arginine biosynthesis
gor00250  Alanine, aspartate and glutamate metabolism
gor00280  Valine, leucine and isoleucine degradation
gor00350  Tyrosine metabolism
gor00470  D-Amino acid metabolism
gor00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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