Gluconobacter oxydans DSM 3504: GLS_c00580
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Entry
GLS_c00580 CDS
T03563
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
goy
Gluconobacter oxydans DSM 3504
Pathway
goy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
goy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GLS_c00580 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
goy03400
]
GLS_c00580 (mfd)
Enzymes [BR:
goy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GLS_c00580 (mfd)
DNA repair and recombination proteins [BR:
goy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GLS_c00580 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
AAA_16
RecG_dom3_C
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AHK69991
UniProt:
A0A067Z0J1
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All DBs
Position
complement(60348..63869)
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AA seq
1173 aa
AA seq
DB search
MEQNETMTREMSTASFGRSFGPTVWGVPDGSVAFLLRQRLAEHDGPLLHVARDDAAVAAL
ADMLAWLMPEVEVLRLPAWDCLPYDRVSPNPVLIAERAGTLCRLLEPTKARRIVLTTVHS
LVQRVPPRSAFRGQSISVKTGESLDQAMLIELLIANGYTRTDTVMEAGEFATRGGIFDLF
PAGESDPIRLDLFGDEVENIRAFDVGTQRSTETLKRFELRPVSEFSLGPDSISCFRTGWR
DSFGSAATSDTIYENVSDGRRYPGLEHYLPLFHDGDGHQMETLLDYLPGGAVSFDHHAPE
ILKARLDMIADHYQARRVPTREGEIPYRPLPPHRLYLDAHGWESMLADVPSVILNAFAMP
DTAQGVDAGYRPGPLFARAKDGSRAGMFEAFGQQVKTWAEAGRRTYVTAWSRGSRERISH
LLAEHGVTTTSYEDWPDAAGMPKGTTGLLTLGLERGFVSDRLCFVSEQDLLGERISRPPR
RRKRGEQFISQVGEIAEGDLVVHSDYGIGRYVGLETVVEGRVAHDYLSILYDGEQRLLLP
VENIELLSRFGSEQAGVQLDKLGGTAWQARKAKMKSRIRVMAGELIKTAAARALKDAPTL
APAEGLWDEFCARFPFVETEDQSRAIADVLEDMSAGRPMDRLVCGDVGFGKTEVALRAAF
VAALSGMQVAVVVPTTLLARQHFRSFSTRFEGFPVSVAQLSRLITPKEATKVREGMADGT
VDIVVGTHALLAKTVSFERLGLLIIDEEQHFGVAHKERLKALREDVHVLTLSATPLPRTL
QLSLSGVREMSLIATPPTDRLAVRTFITPFDSVMIREAIQRERFRGGQIFCVVPRLADMD
RMAERLTEIVPDAKTVQAHGRLTPTELERVMTEFADGKYDILLSTNIVESGLDMPSVNTI
IIHRADMFGLGQLYQLRGRVGRGKQRGYAYLTWPQTRPLSPSSEKRLEVMQTLDSLGAGF
TLASHDLDLRGAGNLLGDEQSGHIKEVGIELYQQMLEDAVIDMRRERGKRQDDEDSWTPT
IILGLPVLIPETYVPDLPVRLGLYRRIASLTNEAEVEAMRAELVDRFGSLPPEVGNLLDV
VLIKRLCREAGVERLETGPKGMVIQFRRNRFRNPAALIDWVTRKKESGVKIRPDHKLAVI
REMTNATRIGYAKKVTTVLCKMIRKLEASKSGD
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaaacgaaaccatgacccgtgaaatgtccacagcgtccttcggcaggtctttc
ggaccaaccgtctggggcgtgccggatggcagtgtggcctttcttctccgccagcgcctt
gccgagcatgacggacctctgctgcatgttgcgcgtgatgacgctgccgtggccgcgctg
gccgacatgctggcttggctcatgccggaagtggaggttctgcgtctgccggcctgggac
tgcctgccttacgaccgcgtctcgcccaatccggttctgatcgccgaacgggccgggacg
ctgtgccgtctgctggagcccaccaaggcgcggcggatcgttctgacgaccgtgcacagt
ctggtacagcgcgtgcccccgcgctcggcattccgtgggcagtccatcagcgtgaagacg
ggtgagagcctcgatcaggccatgctgatcgaactgctgatcgccaacggctacacccgg
accgatacggtcatggaagcgggcgagttcgcgacacggggcgggattttcgatctgttc
ccagccggcgagagcgatccgatccgtctggacctgttcggggatgaggtcgagaacatc
cgcgcgttcgacgttggaacgcagcgttccaccgaaaccctgaagcgtttcgaactgcgg
ccggtgtccgagttctcgctgggtcctgacagtatcagctgcttccggacaggctggcgc
gattcgttcggctcagccgcgacatccgatacgatctacgagaacgtttccgacgggcgg
cgctatccggggttggagcattatctgccgctgtttcatgacggtgacggacaccagatg
gaaacgctgctggattatctaccgggtggtgcggtcagctttgaccatcatgcgccggaa
atcctcaaggcgcggctggacatgatagccgatcattatcaggcccgccgtgtgccgacg
cgtgagggcgaaattccgtatcgtccgctgccgccgcacaggctgtatctggatgctcac
ggctgggagtcgatgctggcggatgtgccttccgtcatcctcaatgcatttgccatgccg
gatacggctcagggcgtggatgcaggctatcgccccggaccgctgttcgcgcgcgccaag
gacggaagccgggccgggatgttcgaagccttcggacagcaggtgaaaacctgggccgag
gcaggacgcaggacctatgtcacggcctggagccgcggatcgcgcgagcggatttcgcat
cttctagccgagcatggtgtcacgacgacgtcctatgaagactggccggatgctgcgggg
atgccgaagggcacgaccggcctgctgacgctgggtctggagcgcggattcgtctcggat
cgtctgtgctttgtctccgagcaggatcttctgggcgagcggatttcccgtcccccccgt
cgccgcaagcgtggcgagcagttcatctcgcaggtcggcgagatcgcggaaggggatctg
gttgttcattccgattacggaatcgggcgatatgtggggcttgagacggtcgtcgaaggc
cgcgttgcacacgactacctgtcgatcctctatgatggggaacagcggcttcttcttccg
gttgagaatatcgaacttctgagccgttttggctccgaacaggcgggtgttcagctcgac
aagctgggcggcacggcctggcaggcgcgtaaagccaagatgaagtcccgcatccgcgtc
atggcgggggagttgatcaagacagccgcggcccgtgcgctcaaggatgcgccgacgctc
gcaccggccgaagggttgtgggacgagttctgcgcgcgcttccccttcgtggagacggaa
gaccagtcccgtgcgattgcagacgtgctggaagacatgagcgccgggcggccgatggat
cggctggtctgtggcgatgtgggtttcggcaagacggaagtggcgctgcgggcagcgttc
gtggccgcactttccgggatgcaggtcgcggttgtggtgccgacgacgttgctggcccgt
cagcacttccgcagcttctcgacgcggttcgagggcttcccggtcagtgtggcgcagctt
tcacgcctgatcacgccgaaagaagccacgaaagtccgcgaaggtatggcggatggcacg
gtggatattgtggtcggcacccatgcgctgctggccaagaccgtgtccttcgagcgtctg
ggcctgctgatcatcgacgaggagcagcatttcggtgtggcgcacaaggaacgtctgaag
gcgctgcgtgaggacgtgcatgtcctgaccctgtcagccacgccgctgcccagaacgctt
cagctttcgctgtccggcgtgcgtgaaatgagcctgatcgcgaccccgccgacagaccgt
ctggcggtgcgcacattcatcacgccgttcgacagcgtcatgatccgcgaggcgatccag
cgtgagcgattccgcggcggccagattttctgcgtcgtgccgcgtctggcggatatggac
cggatggccgagcgcctgacggaaatcgtcccggacgccaagaccgtgcaggctcatgga
cgcctgacgcccacggaactcgaacgcgtcatgacggaattcgcagacggaaaatacgac
atcctgctctccacaaacatcgtggaaagcgggctggatatgccgagtgtgaacacgatc
atcattcaccgcgcggacatgttcggtctggggcagctctaccagcttcgcggacgtgtc
gggcgtggcaagcagcgcggttacgcgtatctgacctggccacagacgcgtccgctgtct
ccgtcatcggaaaagcggcttgaggtcatgcagacgctggactcgctcggggcgggcttc
acgctggcgtcccacgatctggacctgcgtggcgctggcaacctgctgggtgatgagcag
tccgggcatatcaaggaagtcgggatcgagctgtaccagcagatgctcgaagatgccgtg
atcgatatgcgccgtgagcgcggcaagcgtcaggacgacgaggacagctggaccccgacc
atcattctcggcctgccggtactgatccccgaaacctatgtgccggatctgccggtgcgt
ctcggactgtaccggcgcattgcgtcactgacgaacgaggccgaggtcgaggccatgcgc
gccgaactcgtggaccgtttcggatcgcttccgccggaagtgggcaatctgctcgatgtg
gtcctgatcaagcgcctgtgccgtgaggctggtgtggaacgtctggaaaccgggccgaag
ggcatggtgatccagttccgccggaaccgtttccgcaatccggccgcgctgatcgactgg
gtaacgcgcaagaaggaatcgggcgtgaaaatccgtcccgatcacaagcttgcggtcatc
cgcgaaatgacgaatgcgacccgcattggctatgccaagaaggtcacgaccgttctgtgc
aagatgatccgcaagcttgaggcatcgaaatcaggggactga
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