Gamma proteobacterium HdN1: HDN1F_29190
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Entry
HDN1F_29190 CDS
T01300
Symbol
rhlB
Name
(GenBank) Putative ATP-dependent RNA helicase, RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
gpb
Gamma proteobacterium HdN1
Pathway
gpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HDN1F_29190 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpb03019
]
HDN1F_29190 (rhlB)
Enzymes [BR:
gpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HDN1F_29190 (rhlB)
Messenger RNA biogenesis [BR:
gpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HDN1F_29190 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
AAA_19
Psb28
Motif
Other DBs
NCBI-ProteinID:
CBL46502
UniProt:
E1VNW0
LinkDB
All DBs
Position
complement(3606207..3608357)
Genome browser
AA seq
716 aa
AA seq
DB search
MHSKQASAPYLPTHRQITICRSQLTRPSVTEPETFKASQDISSQPEASSHQEAPSHQEAP
LRHEMASQTEPHPEPHDHEATQVEPVTQHTRETNALRHEVIAANSAPSTATEAPSEVKTE
PAPAMLPKPEALHTPAQQSVQTAPAAEINEPNVAAETTSQTSAIVSSDPITETSASAAAQ
ATPKAQVALETQAPLETQAAQETQAPLETQAPLETQAPLEPQPNAANDTALDAQAEANDE
TSGANDDPIEASAPAAPKPEKPALPFSALALDPRLQKGIDELGFSHCTPIQSEALPLSLK
QRDIIGKAQTGTGKTAAFLITIIQTLLTEPEQEERYNGEPRALILAPTRELALQIEKDAL
PLLKHTSLNMVSIVGGMDYKKQQKHLQDEIVDIVVGTPGRLIDFVRGKDLFLSETEILVI
DEADRMLDMGFIPDVKRLVRETPYKTYRQTLLFSATFTRDIINLASNWTTDPAQIEIEPE
SVANASVDQKIYIVTAEQKINVLYNLITQQELDRVMVFVNRRDETRDLTTRLKALGLRVA
MLSGEIPQHKRLRTLENFRNGRLRVMVATDVAGRGIHIEGISHVVNYTLPEDPEDYVHRI
GRTGRAGATGTSVSFACEEDAFLLPAIQALLGEEIQCTHPDADLLADLPEIITSQPTEHT
HTEHRTEHRRPQRRGGGDRNSHSRNSNSHNSHRQPHSRESSQAREPRETGSPASDD
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
ttgcattcgaagcaggccagtgcgccctatttaccgacccatcgccagatcaccatctgc
agatcacaacttacgaggccttccgtgaccgaaccggagacattcaaagcgtcccaagat
atttcttcccagccagaagcttcctcacatcaagaagctccctcacatcaagaagctccc
ttgcggcacgaaatggcatctcaaacggaaccacacccagagccacacgatcacgaagca
actcaggttgagcctgtcacccagcatacccgcgaaacgaacgctcttcgccatgaagtg
atcgctgccaactccgcgccaagcactgcaaccgaggccccttcagaagtcaaaacagag
cctgctcctgcaatgcttcccaagcccgaagcgttgcacacgccagcgcaacaatcggtg
caaaccgcaccggcggccgaaatcaacgagccgaacgtcgcagcagaaaccacatcccaa
accagcgcaattgtgagttccgatcccattactgaaacctcggcaagcgcggcagctcaa
gccactccaaaagcccaggtagctctagaaacccaagcgcctttggaaacccaagcagcg
caagaaacccaagcccctctagaaacccaagcccctctagaaacccaagcccctctagaa
ccccaaccaaacgcggctaacgacaccgctctagatgcccaagcagaagcgaacgacgaa
acaagcggcgcaaacgacgatcccattgaagcttctgcacccgcagcacccaagcccgaa
aaaccagcgctaccgttcagcgcgctcgcccttgacccgcgcctgcaaaaaggaattgat
gaactcggcttcagccattgcacaccgatccaatccgaagcgctgcccctatcgctcaag
cagcgcgatatcatcgggaaggctcagacaggaaccggcaaaacagctgcctttctgatc
accatcattcaaaccctgctaaccgaaccagagcaagaagagcgctacaacggcgagccg
cgcgccctgatcttggcccccactcgggaactcgccctccaaatcgaaaaagatgcgctg
ccgctgctcaaacacacgtcgctgaatatggtcagcatcgtgggcggtatggactacaag
aaacagcaaaagcacttgcaggatgagatcgtcgatattgtcgtcggcacccctggccga
ctgattgactttgtgcgcggaaaagatctgtttttgagtgaaacggagatcctcgtaatt
gatgaagcagaccgcatgctagacatgggctttatcccagatgtgaagcggctggtgcgc
gaaactccctacaagacttatcgccaaaccttgctgtttagcgccacattcacccgcgat
atcattaacctagcgagcaattggaccacagaccctgcccagattgagatcgaaccggaa
agcgtcgccaacgcttcagtagatcaaaaaatctacattgtcacggcagaacaaaaaatc
aacgtcctctacaacctgattacgcaacaggaactggatcgggttatggtgttcgtcaat
cgacgtgacgagactcgtgaccttacgactcgcctgaaagcattagggctgcgtgtcgct
atgctctccggcgaaattccgcagcacaagcgcctgcgtactttggaaaacttccgcaac
ggccgtctgcgcgtgatggttgccaccgacgtcgcggggcgtggaatccatattgaaggc
atcagccacgtcgtgaactacaccctgccggaagatccagaagactacgttcaccgcatt
ggccgcaccgggcgcgcgggcgctacgggcacgtcggtcagctttgcgtgcgaagaagat
gcgtttctccttcctgcaattcaagcgctgctaggcgaagaaatccaatgcacacaccca
gacgccgatctactcgctgacctgcctgaaattatcacgagccaacccaccgaacataca
cacacggagcatcgtacagaacaccgccgcccgcagcgcagaggcgggggcgaccgtaat
tctcattcgcgcaactccaattcacacaactcccacaggcagccgcactctcgcgaaagc
agccaagctcgcgaaccccgcgaaaccggttcacctgcttctgacgactag
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