Gordonia pseudamarae: GII33_01295
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Entry
GII33_01295 CDS
T07482
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gpd
Gordonia pseudamarae
Pathway
gpd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GII33_01295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gpd03400
]
GII33_01295
Enzymes [BR:
gpd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GII33_01295
DNA repair and recombination proteins [BR:
gpd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GII33_01295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Collagen
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QHN24806
LinkDB
All DBs
Position
complement(317637..320045)
Genome browser
AA seq
802 aa
AA seq
DB search
MAGDTLDIDGRTIAVTNLSKVLYPPVGADTAGTRKFEVIDYYNRIADVMLPHIRGRIITR
KRRPGGVGASGATGNAGASGATGNAGASGATGNTRSAAFFEKHLPESAPAWLPRYTVEHS
GRHITYPLADDRAALVWLAQMAALELHVPQWRVPVDGGPVTASRLVLDLDPGPGVPLHEC
AQVALQIRQMLDAAGLRSFPVTSGGKGIHVYARFDRPVSPDSARKVAKQIATALASAYPE
TITASMAKSVRERRVFIDWSQNSAAKTTLAPYSLRGRERPWAAAPRTWDELAEPDLRQLL
YTEILERVAASGDLLSGLDDPSPPASSSYQEPGLVADLSEYRSKRDEARTPEPFGDDEHR
RSTRAGPVFVIQEHHARRPHYDFRLEHDGVLVSWAIPKNLPTDHDQNRLAVRTEDHPLDY
ADFAGDIPAGEYGGGHVEIWDTGTYELEKWRDEEIIVRLRGRRTQGRYVLIKTGERNWLA
HLMHDEPRPLTADLRHPRPMLAVDEPIDGLDARDWAFEGKWDGYRVLVRSGGGEYRLSSR
SGLDLTADFPELRGIVDELGLLDVILDGEVVAIDSSGRTDFTILASRGTTAEPYRLRLLL
FDILYLNGTSLLEVPWSQRRALLDELTPLFRSSPYTEVPALLEGSGADAIAHSREHNYEG
VVAKLRSSVYQQGRRSTQWRKHKNWNDIEVVIGGWRPGRGNRSGTLGSLLLGLPEETGLR
YVGRVGTGFTDAQLRALAEELQPLRIRMCPFIDNIDRPVASTATWVLPTLVGEVRFMDWT
STGHLRHPSWRGIRRDKLPGDL
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgacaccctcgacatcgacggccgcacgatcgctgtcaccaacctgtccaaa
gttctgtatccgccggtcggcgccgacaccgccggtacccgcaaattcgaggtcatcgac
tactacaaccgcatcgccgatgtcatgctgccgcatatccggggccgcatcatcacccgc
aaacgccggcccggcggtgtcggggcgagcggagcgacgggaaatgccggggcgagcgga
gcgacgggaaatgccggggcgagcggagcgacggggaatacccgttcggccgcgttcttc
gaaaagcatctccccgagagtgcccccgcgtggctgccgcggtacaccgtcgaacacagc
ggccgccacatcacctacccgctggcggacgaccgcgccgcgctggtgtggctggcgcag
atggcggcgctcgaactgcacgttccgcagtggcgcgtgccggtggacggcgggccggtc
accgcatcgcggctcgtgctcgacctcgatcccggaccgggggtgccgctgcacgaatgc
gcgcaggtcgcgctgcagatccggcagatgctcgacgccgcgggactgcgttcgtttccg
gtgaccagcggcggcaaaggaatccacgtgtacgcccggttcgaccgcccggtgtcgccc
gactcggcgcgcaaggtggccaaacagatcgcgacagctctggcgtcggcgtaccccgag
acaatcaccgcgtcgatggccaagtccgtgcgcgaacgtcgggtattcatcgactggagc
cagaacagtgccgccaagacgacgctcgccccgtattcgctgcggggccgggagcggccg
tgggcggcggcgccgcgcacctgggacgaactcgccgaacccgacctgcggcagttgctg
tacacggagatcctggagcgggtcgccgcgtcgggggatctgttgtcggggctcgatgac
ccgtcgccgccggcatcgtcgtcgtaccaggagccgggcctcgtcgccgacctgtcggag
taccggagcaaacgcgacgaggccaggacacccgaaccgttcggtgacgacgagcaccgc
cgatccacgcgagccgggccggtcttcgtcatccaggagcatcacgcgcgccgcccgcac
tacgacttccgcctcgaacacgacggggtactggtgtcgtgggcgataccgaagaatctg
ccgaccgatcacgatcagaaccggctggcggtgcgaaccgaggaccatccgctcgactac
gccgacttcgccggcgacattccggccggggagtacggcggcggacacgtggagatctgg
gacaccggaacctacgagctggagaagtggcgggacgaggagatcatcgtccggttgcgg
ggacgccggacccagggccgatatgtgctgatcaagaccggcgaacgcaactggctggca
catctgatgcacgacgaaccgcgccccctcaccgccgacctgcggcatccccggccgatg
ctggccgtcgacgaaccgatcgacggcctcgacgcacgggactgggcgttcgagggcaaa
tgggacggctaccgcgtgctggtgcgttcggggggcggcgagtaccggttgtcgtcgcgg
tcgggactggacctgaccgccgattttccggagttgcgcggcatcgtcgacgaactcggc
ctgcttgacgtgatactcgacggcgaggtggtggcgatcgactcgtcgggccgcaccgat
ttcaccatcctggcatcccgcggcaccaccgccgaaccgtaccggctgcggctgctgctg
ttcgacatcctgtacttgaacggcacgtcactgctggaagtgccctggtcacagcgccgt
gccctgctcgacgaactcaccccgctgttccggtcgtcaccgtacaccgaggtgcccgcg
ctgctggaggggtccggggcagacgccatcgcgcacagccgcgagcacaactacgaaggt
gtcgtggccaagctgcgcagttcggtctaccagcagggacgccgctccacccagtggcgc
aagcacaagaactggaacgacatcgaggtggtgatcggcggatggcggcccggccgcggc
aaccgttcgggcaccctcggctcgctgctgctgggtctgccggaggagaccggcctacgg
tacgtcggcagggtggggacaggtttcaccgacgcccagctgcgggcactcgccgaggaa
ctgcaaccgctgcggatccggatgtgcccgttcatcgacaacatcgaccggccggtcgcg
tcgacggccacgtgggtgctgcccacactggtcggcgaggtgcggttcatggactggacc
tcgaccgggcatctgcggcacccgagctggcggggaatccggcgcgacaagctgcccggc
gacctgtag
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