Geobacter pickeringii: GPICK_04365
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Entry
GPICK_04365 CDS
T03568
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gpi
Geobacter pickeringii
Pathway
gpi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gpi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GPICK_04365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gpi03400
]
GPICK_04365
Enzymes [BR:
gpi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
GPICK_04365
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
GPICK_04365
DNA repair and recombination proteins [BR:
gpi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GPICK_04365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zf-TFIIB
Zn-ribbon_8
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AJE02704
UniProt:
A0A0B5BCB0
LinkDB
All DBs
Position
complement(948722..949525)
Genome browser
AA seq
267 aa
AA seq
DB search
MPELPEVELTRRRLERELVGKRIERVVVRTPKLRFPIPRELHDSLPGRTVRSVERRGKYL
LLECEAGWLIIHLGMTGFLRLLPGTPPPGKHDHLDIAFADGAVLRFHDPRKFGTVAWTTD
TPATHPLLAGIGPEPLTTAFDGAYLYDASRGRRVAVKQLLMNAAIVAGVGNIYANEALFR
AGIRPDRPSSSLSHSECGRLVLAVREVLQGSIDQGSTYRVAEHTVAYHPLDFAVYGRGTG
DCTRCGGALEEIRLGNRSTVYCPRCQR
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
gtgccggaacttcccgaggttgaactgacccggcggcggctggagcgggagctggtgggg
aaaaggatcgaacgggtggtggtccggacgccgaagctccgttttccgatcccccgggag
ctgcacgactccctgccagggcggacggtccggtcggtggagcggcggggaaagtatctg
ctgctggagtgtgaggcgggatggctcatcatccatctggggatgaccggctttctccgg
ctccttcccgggacgccgccccccggcaaacacgatcacctcgacatcgcctttgccgat
ggcgcggtgctccgcttccacgacccgcggaagttcggcaccgtggcctggaccacggat
acgccggcaacgcatccgcttctggccgggatcggcccggaaccgctgacgacggccttt
gacggcgcctatctctacgatgcgagccggggacgccgggtcgcggtgaagcagctgctc
atgaacgcggcgattgtggccggggtcggcaatatctacgccaacgaggcccttttccgc
gccggcatccgtcccgaccgcccctcttcctccctcagccactccgaatgcgggcggctg
gtccttgcggtccgggaggtgcttcaggggtcgatcgaccaggggagcacctaccgggtg
gcggaacatacggtcgcctaccatccgctggattttgcggtctacggacgggggacgggt
gactgcacccgctgcggcggtgccctggaggagatccggctcggcaaccggagcacggtc
tactgcccccgctgccaacggtga
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