Geomonas paludis: M1B72_10170
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Entry
M1B72_10170 CDS
T08160
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gpl
Geomonas paludis
Pathway
gpl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
M1B72_10170 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gpl03400
]
M1B72_10170 (ligD)
Enzymes [BR:
gpl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
M1B72_10170 (ligD)
DNA repair and recombination proteins [BR:
gpl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
M1B72_10170 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
UPU38048
LinkDB
All DBs
Position
2380849..2383473
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AA seq
874 aa
AA seq
DB search
MADPTDKSPHQQGLQRYREMRDFSRTPEPSGSQSPPGDIFVVQKHAASHLHYDFRLRLHG
ALKSWALSKGPSLDPGQHRLASQTEDHPLDYASFEGIIPAGNYGAGTVLIWDQGTWEPLE
GGKGDYYRGRLHFILHGERLKGRWTLTRQQDDPKKWMLTKDNDEYATQQDPLSQETSVVS
GRTLEEIAQDRDRLWTSDQGEVASRAGFGHVPGGSLPAYLEPQAATLVEQVPVGDEWLHE
IKYDGYRMVCRIDKPGNGVRFYSRKGYDFTGRLKSLKQAMLALPLEQGWFDGEILVFSAS
GGSDFHALQQAFKEGKEAGIVYLVFDLMNYEGYDLRGAPLVERKALLQELLPPDGPVRFV
DHVVGQGREFFAAVCEQRLEGVLSKRLDAEYQSQRTKTWLKVKCAQRQEFVVGGFTESDA
GRPFGSMLAGYYNDRDELVFAGKIKTGYSIDASLALLQTMQPYEQPEPSFVNPPSGEEYR
NPHWLKPELVAEVAFVELSGSGLLRHASFKGLREDKKAIEVRLEEPELLQDEPVPPTPQP
PPAFADRSATARRPVKGGGVPSVDDVHDVHHVRHTGEQAEAPPSPPPLSRRARGELPRPG
KVVPVFPHERITREDIERYYEAVAPRMLPYLADRPLTLISCRTNIYACKFTKHATNIPAP
VKAVDAGHEERYIAIDSWPALQVLVRLGVVEIHAWQSRYTDLEHPDRMLFDLDPPEDESL
PWERLVEAALMLRIHLQEYGLESYLQTTGGKGYYVVVPLLPAAAWPEMTGFSKRISKEME
AKYPDRFTAQLAKEKRGGRIYLDWMRNGRGANAAEPYSLRARPGAPVATPITWEEMVAGA
RPAYFNLRNIPERLAALSQDPWPGYFELRQKLPG
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atggcggatccaaccgataaatcgccgcaccaacaaggcctgcaacgctaccgggagatg
cgggactttagccgcacccccgagccctccggttcacaatcgcctcccggtgacatcttc
gtggtacaaaagcacgcagcctcccacctccactacgacttccgcctgcgcctgcacggc
gccctcaaaagctgggccctcagcaagggcccatccctcgatccgggccaacacaggctc
gccagccagaccgaagaccatcccctggactatgcctccttcgaaggaatcatccccgcc
ggcaactacggcgccggcacggtgctgatctgggaccagggcacctgggaacccttggaa
ggcgggaagggtgattactaccgcggcaggctgcatttcatactgcacggggagcggctc
aaggggcgctggaccctgacccggcagcaggacgatccgaagaagtggatgctcaccaag
gacaacgacgagtacgccacccagcaggacccgctcagccaggagaccagcgtggtcagc
ggacgaacgctcgaggagattgcgcaggaccgggaccggctctggacctcggaccagggg
gaggtcgcttcccgtgccggcttcgggcacgtcccgggagggagtctccccgcctatctt
gaaccgcaggctgccacgctggtggagcaggtgccggttggagacgaatggctgcatgag
ataaagtacgacggctaccgcatggtgtgccggatcgacaagccgggcaacggggtccgt
ttctacagccggaaggggtacgactttaccgggcggctcaaaagcctgaagcaggcgatg
ctggctctgccgcttgagcagggatggttcgacggcgaaatcctcgttttcagcgcctcg
ggagggagcgattttcacgcgctgcagcaggcgttcaaggaagggaaggaagccggcatc
gtctacctggtcttcgacctgatgaactacgaagggtatgacctgaggggggcgccgctg
gtcgagcgcaaggcgctcttgcaggagttgcttcccccggacggcccggtgcggttcgtg
gatcacgtggtagggcaggggagagaattcttcgccgccgtatgcgagcagcgcctggaa
ggggtactctccaagcgtcttgacgcggagtaccagtcgcaacggaccaagacgtggctc
aaggtgaagtgcgcgcagcgtcaggagttcgtggtcggcggcttcaccgagtccgatgcc
gggcgtcctttcggctccatgctcgccggctactacaacgacagggacgaactggtcttt
gccgggaagatcaagaccgggtacagcatcgatgcaagcctggcgctgttgcagaccatg
cagccttacgagcagcccgagccttccttcgtgaacccgcccagcggcgaggagtaccgg
aacccgcactggctgaaacccgagctggttgctgaagtggcctttgtggagctttcgggg
agcggcttgctgcgtcatgcctcgtttaaggggctgcgggaggacaagaaggcgatcgag
gtgcggttggaggagcccgaactgctgcaggacgaaccggtgccacccaccccccagccc
cctcccgccttcgcggaccggagcgctacggcgcgcaggcccgtcaagggagggggagtc
ccatctgtcgacgatgtccacgacgtccaccacgtccgccataccggcgaacaagccgag
gcgccgccctcacccccgcccctctcccggagggcgaggggagaactaccgcggccgggg
aaggtggtgccggtgttcccccacgagcgcattacccgggaggacatagagcgctactac
gaagcggtggccccgcgcatgctcccttacctggccgaccggccgctgacgctcatctcc
tgccgcaccaacatctacgcctgcaagttcaccaagcacgcgaccaacatccccgcgccg
gtcaaggcggtggacgccggacacgaggaacgctacatcgccattgattcgtggcccgcg
ctgcaggtcctggtacggttgggcgtggtcgagatccatgcctggcagtcgcgctacacc
gacctggaacaccccgaccggatgctcttcgacctcgacccgcccgaagacgagagcctg
ccgtgggagcgcctcgtcgaggcggcactgatgctgcgcatccacctgcaggagtacggt
ctggagagctacctgcagaccacgggagggaaagggtactacgtggtggtgccgcttctt
cccgctgccgcctggccggagatgaccggcttctccaagcggatttccaaggagatggag
gcgaagtacccggaccgtttcaccgcccaactcgccaaggagaagagaggggggcggatc
tacctggactggatgcgcaacggccggggcgccaacgccgcggagccttattcactgcgg
gcccgccccggtgcgccggtcgccacgccgatcacctgggaggaaatggtggccggggca
aggcccgcctacttcaacctgcgcaacatccctgaacgcctcgcggcactatcgcaggac
ccgtggccgggatacttcgagcttcgtcaaaagttgccaggttag
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