Gimesia panareensis: Pan110_34720
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Entry
Pan110_34720 CDS
T07079
Symbol
rpoD_1
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
gpn
Gimesia panareensis
Pathway
gpn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gpn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Pan110_34720 (rpoD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gpn03021
]
Pan110_34720 (rpoD_1)
Transcription machinery [BR:
gpn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Pan110_34720 (rpoD_1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
Mso1_C
Motif
Other DBs
NCBI-ProteinID:
QDU51110
UniProt:
A0A518A8Q4
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All DBs
Position
complement(4640121..4641176)
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AA seq
351 aa
AA seq
DB search
MSQETSFSSSEIDSFSDLGNRAVHLEQRQTCQCELLAVKKAARMRKVCVTRELQTRAERL
CSEEIEYVFSERFDQEDAMDQILVPLQTLCAELKPRTDDDDLSDDTGLLQTRLYAVPLLN
KEQEVILFRGMNYLKYRAAMLQKQVDLKAPCIGILDRIEQKLKDARSLRDYIIQANLRLV
VSIAKNLTDRANSFEDIVSDGYLPLIRAVEIFDIDRGNRFSTYGTWAVRNYLFRTTKKGR
KYRKNFVNGAETLALGLSDIRSTLRSQETYHRSIEQVLEQVLCSLDQRERQILRRRFGLS
PAEVPEKFREIAEDFGVSTERVRQLTIRSLQRMRDMIEEQSLEIPDISEIL
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagaaaccagtttttcctcatcagaaatcgattccttttccgatctgggcaac
cgcgccgtgcatctggagcagaggcagacctgccagtgtgaactgctggccgtcaagaaa
gcggcccggatgcggaaggtgtgtgtgacacgtgaattacagacacgggccgagcgactc
tgttccgaggagatcgaatacgtttttagtgagcggttcgatcaggaagacgcgatggat
cagattctggtccccctgcagacgctgtgtgcagaactgaagccccggactgatgatgac
gacctgagtgacgatacaggcttgctgcaaacccgcctgtatgccgttcccctgttaaat
aaagagcaggaagtcatcctgtttcgtgggatgaattatctgaaataccgggcagccatg
ctgcagaagcaggtcgatctgaaagcaccctgtattggtattctggaccgaatagagcag
aaactgaaagatgcccggagtctgcgggattacattatccaggccaacctgcggctcgtg
gtctcgattgccaaaaatctgacggatcgggcgaattcgttcgaggatattgtcagcgat
gggtatctgcccctgattcgggccgtggagatttttgacatcgatcgcggaaaccgtttc
agcacttacgggacctgggccgtccgcaattacctgtttcgcacgaccaaaaaaggacgt
aagtatcgtaaaaactttgtcaacggtgccgagacactcgcgctgggactgagtgatatt
cgttccactctgcgttcgcaggaaacgtatcatcgttcgattgaacaggtgctggagcag
gtactgtgttcactggatcagcgagagcggcagattttgaggcggcgttttgggctgtca
cctgccgaagttccggaaaaatttcgcgagatcgcggaagatttcggcgtgagcaccgaa
cgggtgcggcaactgacgattcgctccctgcagcggatgcgggacatgatcgaggaacag
agtctggaaataccggatatttctgaaatcctttga
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