Gimesia panareensis: Pan110_38540
Help
Entry
Pan110_38540 CDS
T07079
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gpn
Gimesia panareensis
Pathway
gpn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pan110_38540 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpn03019
]
Pan110_38540 (deaD)
03009 Ribosome biogenesis [BR:
gpn03009
]
Pan110_38540 (deaD)
Enzymes [BR:
gpn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pan110_38540 (deaD)
Messenger RNA biogenesis [BR:
gpn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pan110_38540 (deaD)
Ribosome biogenesis [BR:
gpn03009
]
Prokaryotic type
rRNA helicases
Pan110_38540 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
AAA_19
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QDU51488
UniProt:
A0A518A9U9
LinkDB
All DBs
Position
5103104..5104858
Genome browser
AA seq
584 aa
AA seq
DB search
MSTDVSEQTKFTDFALSQPVLDSLETLGYETPTPIQAQTIPYLLEGRDLVGQAQTGTGKT
AAFALPLLSKIDLELKSPQVLVLAPTRELAIQVAESFKGYGSQMQGLQVLPIYGGASFQG
QLQPLKRGVHVVVGTPGRVMDHMRRGTLKLDQLRCLVLDEADEMLRMGFIDDVEWILEQT
PDNHQTTLFSATMPDAIRRIAGNYLQSPEQITVKVKTRTADTIHQRFWLAKGHHKLDALT
RILEVEETDGVIIFVRTKSITTELAEKLEARGFLAAPLNGDIPQRQRELTVGRLKAGHVN
IVIATDVAARGLDVDRISHVINYDLPGDSEAYVHRIGRTGRAGRTGEAITFVSPRETRSL
SGIERAIKHKLERMELPTIDVINESRTARFKDSITQAMGSPDFGMFSKLLGEYQAETNCS
EIEIAAALACLHQGKRPLFLKETPKKESRKPRETFNRDQGPSERRFNKEKDRPRKRPHND
SPEEGMERFKVQVGHNHGVKPGNIVGAIANEANLDSQYIGRINIFDDFSTVDLPEGMPRN
IFRALKNVWVAGQQLRISRWESPEAFAGKRKRFKGKQKHKQQKA
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactgatgtctctgagcagacaaaattcactgattttgcgctttcacaacccgtt
ctggactcgctcgaaacactgggttacgagactccgaccccgatccaggcgcaaaccata
ccttatcttctggaaggccgcgacctggtggggcaggctcagaccggaaccggcaagaca
gccgccttcgcactccccctgctctccaaaatcgatctggaactcaaatcaccccaggta
ctcgtgctcgcaccgacccgggaactggcaatccaggttgctgagtctttcaaaggctac
ggctcacagatgcagggactgcaggtgctccccatctacggaggggccagcttccaggga
cagctgcaaccgctcaaacggggcgtgcatgtcgtcgtgggaaccccgggtcgcgtgatg
gaccatatgcgacggggcacattgaagctggaccagctccgttgccttgtccttgatgaa
gcagacgaaatgctgcggatgggcttcattgacgatgtggaatggatcctggaacagaca
cctgataaccatcaaaccacccttttttcagccaccatgcccgatgccatccgccgcatc
gctggtaattatctacagtctcccgaacaaatcaccgtcaaagtcaaaacacgaaccgcg
gacacaatccatcagcggttctggctggcaaagggacaccacaaactggatgccctgacc
cgtattctggaagtcgaagaaacagacggcgtcattatctttgtacgcaccaagagcatc
accaccgagttggccgagaaactggaagcccgcggcttcctggcggcaccattgaatggt
gatattccccagcgacagcgcgagctcaccgttggcaggctcaaagccggacacgtcaat
attgtcatcgccaccgatgtcgctgcccgcggactcgacgtggaccggatcagccatgta
atcaactacgatctgccgggcgactccgaagcctacgtgcatcgcatcggccgcaccggt
cgtgccggccggaccggcgaggcaattacgtttgtctctccacgggaaacacgttccctt
tccggcattgaacgggccatcaaacacaagctggagcggatggaactccccacgatcgac
gtgatcaatgagagtcgcacggcgcgctttaaagattccattacccaggcgatgggatcc
ccggactttggcatgttcagcaagctgctcggcgaatatcaggcagaaaccaactgctct
gaaatcgaaatcgccgccgccctggcctgcctgcatcagggcaaacgacctttgtttctc
aaagagacccccaaaaaggaatcccggaaaccacgggaaacattcaaccgcgatcaggga
ccgtcggaacgtcgtttcaacaaagagaaggatcggccccgcaaacgtccgcacaacgat
tcccccgaggaaggtatggaacggttcaaagtccaggtggggcacaatcatggcgtcaag
ccaggcaacatcgtcggtgccatcgccaacgaggccaatctggacagtcagtatatcggc
cgcatcaacatctttgatgatttcagcaccgtcgatctgccggaaggcatgccccgcaat
atcttccgggcgctgaagaatgtctgggttgccggtcagcagttgcggatctcccgctgg
gagtcccctgaagcattcgccggaaaacgcaaacgcttcaagggaaaacagaaacacaag
cagcagaaagcataa
DBGET
integrated database retrieval system
