Gibbsiella quercinecans: AWC35_00955
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Entry
AWC35_00955 CDS
T05060
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gqu
Gibbsiella quercinecans
Pathway
gqu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AWC35_00955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gqu03400
]
AWC35_00955
Enzymes [BR:
gqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AWC35_00955
DNA repair and recombination proteins [BR:
gqu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AWC35_00955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ATA18034
UniProt:
A0A250AVT8
LinkDB
All DBs
Position
198224..201709
Genome browser
AA seq
1161 aa
AA seq
DB search
MSTSDNHSRSQSSSSRYSLPERAGDVRQLGQLTGAACAVECAEIVERHNGPVLLIAPDMQ
NALRLRDEIQQFTDQLVTTLPDWETLPYDSFSPHQEIISARLSSLYHLPTMARGVIILPV
NTLMQRVCPHEFLHGHALVMKKGQRLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLD
LYPMGSEEPYRIDFFDDEIDSLRIFDVDSQRTLSEVEAINLLPAHEFPTDKNAIELFRSQ
WREQFEVRRDAEHIYQQVSKGTWPAGIEYWQPLFFSQELPSLFSYLPANTLLVNTGNLQS
AADRFWLDVKSRYESRRVDPMRPLLPPESLWLRVDALFAELKAWPRMELKTDTLPARAGN
TNLDYRPLPDLAVQAQQKSPLDNLRRFIESFDGSVIFSVESEGRRETLQDMLGRIKLAPS
LLTRLDQAEAPGRYMMIGAAEHGFLDGIRNRALICESNLLGERVSRRRQDNRRTINTDIL
IRNLAELHSGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILAYAGDDKLYVPVSSLHLIS
RYAGGADENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYALRAAKSGYAFKHNREQY
QLFCQSFPFETTPDQQQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGK
QVAVLVPTTLLAQQHFDNFRDRFATWPIRIEMMSRFRSAKEQQQVLDSAAEGKVDIIIGT
HKLLQSDLRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM
RDLSIIATPPARRLAVKTFVREYDNLLVRESILREVLRGGQVYYLYNDVENIEKAAQRLA
ELVPEARVAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADR
FGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSADAHKRLEAIASLEDLGAGFALATHDL
EIRGAGELLGEDQSGQMTTIGFSLYMDLLESAVDALKHGREPSLEDLTSSQAEVEMRMPA
LLPDDFIPDVSTRLSFYKRIASAKNQDELEELKVELIDRFGVLPDAARNLLHSAALRQQA
LTLGIKRIEGNERGGFIEFGEKNRVDPAYLIGLLQSKPQVYRLDGPAKLKFMLDLSDRAK
RMKFVSELLAAFHAHTLALAS
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgagcacttctgacaatcacagccgttcccaatcctcctcatcccgttattccctgcca
gaacgcgcgggcgatgtgcgccaattggggcaactgacgggggcggcctgcgcggtggaa
tgcgccgagatcgtcgagcgccataacgggccggtgttgctgatcgccccggatatgcaa
aatgccctgcggctgcgcgatgagatccagcagttcaccgatcagttggtgaccaccttg
ccggactgggaaacgctgccttatgacagcttctccccgcaccaggaaattatctccgcg
cgcctctccagcctgtatcacttgccaaccatggcgcgcggcgtgatcattttgccggtg
aacacgctgatgcagcgcgtctgcccgcatgaattcctgcatggccatgcgctggtgatg
aaaaagggccagcgcctgtcacgcgataaactgcgggcgcagttggaacaggccggctac
cgcagcgttgatcaggtgatggagcacggtgagttcgccacccgcggcgccctgctcgat
ctctacccaatgggcagcgaagaaccttaccgcatcgatttcttcgacgacgagatcgac
agcctgcgcattttcgacgtcgacagccaacgcacactcagtgaagtcgaggcgatcaac
ctgctgccggcgcatgagttcccgaccgataaaaacgccattgagctgttccgtagccaa
tggcgcgaacagtttgaagtgcggcgcgacgccgaacacatttaccagcaggtcagcaaa
ggcacctggccggccggcattgaatactggcaaccgctgtttttcagccaggaattgcct
tccctgtttagctatctgccggccaacacgctgctggtgaacaccggcaatctgcaaagc
gccgccgatcgcttctggctggatgtcaaaagccgctatgaaagccgccgggttgatccc
atgcgcccgctgttgccgccggaaagcctgtggctgcgcgtggatgccctgtttgccgaa
ttaaaagcctggccgcgcatggagctgaaaaccgacaccctgcccgccagggccggcaat
accaacctggattaccggccgctgccggatctggcggtgcaggcgcaacagaaatcaccg
ctggacaacctgcgccgctttatcgaaagctttgacggcagcgttattttctcggtggaa
agcgaaggacggcgtgaaacgctacaggacatgctcggccgcatcaagctggcgccaagc
ctgctcacccggctcgatcaggcagaagcgccagggcgttatatgatgattggcgccgcc
gaacacggcttcctggacggcatccgcaaccgggcgctgatctgcgaaagcaatctgctg
ggcgaacgcgttagccggcggcggcaggataaccgccgcaccatcaataccgacatactg
atccgcaacctggcggagttgcactccggccagccggtggtgcacctggagcacggcgtg
ggccgctacgtgggcctcaccacgctggaagccggcggcatcaaagccgaatacctgatc
ctcgcctatgccggcgacgacaagctgtatgtgccggtatcttcgctgcacctgattagt
cgctatgccggcggcgcagacgaaaatgccccgctgcataagctgggcggcgatgcctgg
tcacgcgcgcgccagaaagcggcagagaaagtgcgtgacgtggccgccgagctgctggac
atctacgcgctgcgcgccgccaagagtggctatgccttcaagcacaaccgcgaacagtat
caactgttctgccaaagcttcccgtttgaaaccacgccggatcagcagcaggcgatcaac
gcggtgctaagtgatatgtgccagccgctggcgatggatcgcctggtgtgcggcgacgtc
ggcttcggcaaaaccgaagtggcgatgcgcgccgcctttctggcggtggaaaacggcaag
caagtggcggtgctggtgcccaccaccctgctggcgcagcagcactttgacaatttccgc
gatcgcttcgccacctggccgatccgcattgaaatgatgtcacgctttcgcagcgccaaa
gagcagcaacaggtgttggacagcgcggccgaaggcaaggtggatatcattatcggcacc
cacaaactgctgcaaagcgatctgcgctggaaagaccttggcctgctgatcgttgatgaa
gagcaccgttttggcgttcgccacaaagagcgcatcaaggccatgcgcgccgatgtcgat
atcctgacgctgaccgccacccccattccgcgcaccttgaatatggcgatgagcggcatg
cgtgatttgtcgattatcgccaccccaccggcacgccggctggcggtgaaaacctttgtc
cgtgagtacgataacctgctggtgcgtgaatccatcctgcgtgaggtgctgcgcggcggg
caggtttactacttgtacaatgacgttgaaaatatcgaaaaggcggcacagcgcctggcg
gagctggtgccggaagcgcgcgtcgccattggccacggccagatgcgcgaacgcgatctg
gagcgggtgatgaatgattttcaccaccagcgcttcaacgtgttggtttgcaccaccatt
attgaaaccggcatcgatatccccagcgccaataccattatcatcgagcgggccgatcgc
ttcggcctggcgcaactgcaccagctgcgcggccgcgttgggcgctcgcaccaccaggcc
tatgcctacctgctaacgccgaacccgaaagcgatgagcgccgatgcccacaagcggctg
gaagccatcgcgtcgctggaggatttgggcgccggctttgcgctggccacgcacgatctg
gaaattcgcggcgccggtgaactgctgggcgaggatcaaagcggccagatgacgaccatc
ggtttctcgttgtatatggatctgttggaaagcgcggttgatgcgctgaaacacggccgt
gaaccttcgcttgaggatctcaccagcagccaggccgaagtggaaatgcgcatgccggcg
ctgctgccggacgactttatcccggacgtcagcacccgcctttcattctataaacgcatt
gccagcgccaaaaaccaggatgagctggaagaactgaaggtggaattaatcgatcgcttc
ggcgtgctgccggatgcggcgcgcaatctgctgcacagcgcggcgctgcgccagcaggcg
ttaacgctgggcatcaagcggattgaaggcaacgaacgcggcggctttattgaattcggc
gagaaaaaccgggtggatccggcctatttgatcggcctgttgcaaagcaaaccacaggtc
taccggctcgatggccccgccaaactgaaattcatgctggatctcagcgaccgggcaaaa
cggatgaagtttgttagcgaactactggccgcgttccacgcgcataccttagcgctggcc
agctag
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