Gossypium raimondii: 105766721
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Entry
105766721 CDS
T04129
Name
(RefSeq) uncharacterized protein LOC105766721 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
gra
Gossypium raimondii
Pathway
gra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105766721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gra03021
]
105766721
03019 Messenger RNA biogenesis [BR:
gra03019
]
105766721
Transcription machinery [BR:
gra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105766721
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
105766721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Motif
Other DBs
NCBI-GeneID:
105766721
NCBI-ProteinID:
XP_012441754
UniProt:
A0A0D2SGF8
LinkDB
All DBs
Position
4:19221775..19228918
Genome browser
AA seq
1042 aa
AA seq
DB search
MENPRRSFDRSREPGLKKPRLTEDLTSNPNIRPFSQRANPVVTASGLRFRSNDSGTNDLI
RGDGGAYEPQPVSHQQQHQQQQELVSQYKTALAELTVNSKPIITNLTIIAGENVHAAKAI
AATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKCFAARLPEVFCKAYRQVDPPLHQS
MRHLFGTWKGVFPLQTLQVIEKELGFTPLVNGSSSGNTTSRTDTLSQRPPQSIHVNPKYL
EKQRLQQSSRAKVMVNDMAGTLGNSKESERPDRAHSIAELSYGSVKMNTPGIEVRRTRGN
ITDQGLDAPWFGATGSVTETIPGQRNGFNVKHGSQNYSASKTVNADPRLHRTHSRNSSGL
LSSWKNSEEEEFMWEMHSRLSEHDAANFSNNMRKDCWTPDVSEKMDFESQLHRPQSIHDA
GSRFDRETSADALSTEQKDKPSFGHQISTAWTDGLPATSSSRSESYSASLGGLPTGASSS
LARIGMRPQTGSSHSGTPGFVFLANVASGSTGTSGKQCLKSVGTALPPEQSPMRQHSPSP
SFPACHNHQQLQKLADPDYQQALSLPRADPKPSHFSGKLSVGSHRDSPQTSAPISLLPSR
HHHLSQPPLPDSMQAETSGQTQKPLPSQISKVEAASALGSALECSNPLAIETSELSSTSS
LLAAVMKSGILSSTSFTGNLSTKISQVVGQISQPPLPNCPPAVLTTSGLIDAAISSDATH
DAITATPNSSQKKVEQLPLPPGPPLSSLVSNAPSQTSDAESKDTNPISNLLSSLVAKGLI
SASKKDAASLPSLQMPNQIEKSPEIERPSESMNKSSDIQSSSDAPRSSTMNEVSYDEPAP
KCSVPPHQSTSTEVESLIGLELRPEVIREFHSSVISGLLDDLPHCCSLCGLRLKLQGRLD
RHLEWHEMTKTESRGSGRALRGWYTRSDDWLAGKPGQLVFDCTGSLNKLEKKTEKAELMV
PADENQCACLLCGELFEDYFSLDRGEWMFKGAAFLTIPSKDGGVGTTDGSAANGPIVHAN
CMSESSVQDLGLSGGIKVEMEE
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggagaatccgcgtagatcatttgatagatcaagagaacctggtttgaaaaaaccacgg
ttaactgaagacctcacttcgaaccctaatatccggcctttttctcaacgagcgaaccca
gttgttaccgcctctggtttgagattccggtccaatgattccggcaccaatgatttgatc
cgtggcgacggtggagcttacgaaccacaaccagtgtcacatcagcagcaacaccagcag
cagcaagagttagttagccagtataagacggcgttagctgagctcactgttaactcgaaa
ccaattattactaacttgacaataatcgctggcgagaatgttcatgccgccaaggccatt
gctgctactgtctgcgctaatattcttgaggttcccagtgaccaaaagctgccatcactc
tatcttttagatagtattgtaaagaatattgggagagactacattaaatgttttgctgcc
aggttaccagaggtgttttgcaaagcatatagacaagttgatcctcccttacatcagagt
atgcgacatctttttggaacttggaaaggggtattccctcttcagactctccaggtgatc
gaaaaggaacttggcttcactcctttggtaaatggttcgtcttcaggaaacacaacatct
agaacggatacactatcacagcgtccaccacaaagcattcatgtaaacccaaagtatcta
gagaagcagcgtcttcaacaatcaagcagggcaaaagttatggtcaatgatatggctggg
actttgggcaactcaaaggagtctgagaggccggatagagcacacagcatagctgaactg
tcatatggatctgttaaaatgaatactcctggcatagaagttagaagaaccagggggaat
attactgatcaggggcttgatgcaccttggtttggagctacaggcagtgttactgagact
attcctggccagaggaatggtttcaacgttaagcatggatctcaaaattactcagcatcc
aaaactgtgaatgctgatcctcgtttacaccgaacacatagtagaaacagcagtgggttg
ttgagcagctggaaaaactctgaggaggaggagtttatgtgggagatgcactctaggttg
tctgaacatgatgcagccaacttctctaataacatgaggaaagattgttggactcctgat
gtttcagaaaaaatggattttgaaagtcagctccacagacctcaaagcattcatgatgcg
gggtctaggtttgatagagagacttccgctgatgcgttatccactgagcagaaggacaaa
ccttcttttgggcatcagatttctaccgcatggacagatggtttgcctgctactagttca
agccgttctgagagctattctgctagtcttggtgggttgcctactggtgcaagttcttcc
ctggccaggataggaatgcgacctcaaacgggttcatcccattcgggaaccccaggcttt
gtgtttttggcgaatgtggcatcaggatccacaggtacttctggaaagcagtgtttaaag
tccgtaggaactgcattacctcctgaacagtctcctatgcgccagcattcaccttcacct
tcatttcctgcatgccataaccatcaacagctacagaaattggctgatccagattatcag
caagctctttccctgcctcgggctgatccaaaaccatctcatttttcaggaaagttgagt
gttgggtctcatagagactctcctcagacttctgctccgatttctttgcttcctagccgt
catcatcacctttcacagccacccctaccagactccatgcaggctgaaacttctggtcag
actcagaagcctcttccgtctcagatctccaaagtagaagcagcctcagcacttggaagt
gcattggagtgttctaatccacttgctattgaaacttcagaactatcaagtactagtagt
ctattagctgctgtaatgaagagtggaatcctctccagcacttcatttactggcaacctt
tcaactaagatttctcaagttgttgggcaaatttcacagcctcctctcccaaattgtcct
ccagctgttttaacaacctcaggcttgattgatgctgcaatttcatcagatgcaacccat
gatgcaataacagctactccgaatagttcccagaaaaaagtagaacagttgccactgcct
cctggaccaccactttcatctcttgttagtaatgccccatcgcaaacttctgatgccgaa
agcaaggatacaaatccaatatctaaccttctgagctcattagttgcaaaaggtttgata
tctgcatcaaagaaggatgctgcatctctaccatctcttcagatgcccaaccaaatagag
aagagcccggaaatcgagaggccaagtgaatcaatgaacaagagttcggacattcagagt
tcgtctgatgctcctcgatcctccacaatgaatgaggtatcctatgatgaacctgctcca
aaatgttcagttcccccacatcagtccacctcaacagaagtagaaagcttgataggatta
gaactcaggccagaggtaatcagagaatttcattcatctgtgatcagtggattgttggat
gaccttccacattgttgcagcttatgtggtcttcgacttaagcttcagggacggcttgat
agacacttagagtggcatgaaatgacaaagactgaatcaagaggttctggtagggcattg
aggggctggtacacgaggtcagatgattggcttgctggaaagcctgggcaattggtattt
gattgcactggttctctgaacaagttggaaaagaaaacagaaaaggctgagcttatggtt
cctgcagatgaaaatcagtgtgcgtgcttgttatgtggcgagctatttgaagattatttt
agcctggacaggggtgaatggatgtttaagggagcagcattcttgactatcccatcaaag
gatggtggggtgggaactactgatgggagtgcagccaatggccccattgtgcatgcaaat
tgcatgtcagaaagttcagttcaggacttgggactgtctggtggtattaaagtggaaatg
gaagaataa
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integrated database retrieval system
