Gossypium raimondii: 105777878
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Entry
105777878 CDS
T04129
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
gra
Gossypium raimondii
Pathway
gra03022
Basal transcription factors
gra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105777878
09124 Replication and repair
03420 Nucleotide excision repair
105777878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gra03021
]
105777878
03400 DNA repair and recombination proteins [BR:
gra03400
]
105777878
Transcription machinery [BR:
gra03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105777878
DNA repair and recombination proteins [BR:
gra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105777878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
MetRS-N
Motif
Other DBs
NCBI-GeneID:
105777878
NCBI-ProteinID:
XP_012456827
UniProt:
A0A0D2RFY3
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Position
10:complement(1939768..1944267)
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AA seq
451 aa
AA seq
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MPQVKIIAKNFMDMVASLPAIKLDLLYRNQFICEAILRSLPPLAKKYVLQMLYIDIPITS
KSLQEWLLADGSSKHKVAIDRLIQLRVFEVIDRKKETTYKLNSTFQTNLRKHMISGGILP
REPMPQSVTARLPTSEELDAYAHEQWECFLLQLISSGQAEKSTSFSSSMMRIFQRGLLRQ
RDKEAPRLTESGFQFLLMDTNAQLWYIIREYISNSEEQGVDQADLIAFLLELSFHTPGEA
YSLDTLTDDQTTMIKDLADLGLVKLQKGRKESWFIPTKLATNLSVSLTDSSSRKQGFVVV
ETNFRMYAYSSSKLHCEILRLFARVEYQLPNLIVGAITKESLYNAFENGITAGQIVTFLQ
QNAHPRVAEKLPSVPENVTDQIRLWETDLNRVEMTPAHFYDEFPSRDVFEAASDFARMHN
GLLWEDAKKMRMVVKAEIHMLMREHLRGQNK
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaggtgaagattatcgccaagaatttcatggacatggtggcttcattgcccgcc
attaagctcgatttgctctatcgtaatcagttcatttgcgaagccattctcaggtcgttg
ccgccgctggcgaagaaatacgtgttacaaatgttgtacatcgatattcccataacatcc
aagtcgttgcaggagtggctgcttgctgatggatcatctaagcacaaagttgcgatcgat
cggttgattcagctaagagtatttgaagtaattgatcggaagaaggaaaccacttacaag
ttaaattccacgtttcagactaatcttcgaaaacatatgatatctggtggtattttgcca
agagaaccgatgcctcaaagtgttactgcaaggcttccaacctcagaggagcttgatgcc
tatgcacatgagcaatgggagtgtttcttgctgcaacttataagttcaggacaagccgaa
aaatcaacgagcttcagctcttccatgatgagaatttttcagcgtggtcttttgcgtcag
agagataaagaagctccaagattaactgagagtggtttccaattcttgttgatggataca
aatgctcagctttggtatattatcagagagtatatctccaattcagaggagcaaggtgta
gatcaagcagacttaattgcttttttgctagaacttagttttcatacccctggtgaggca
tatagtttagatacactgactgatgaccagacaactatgatcaaggaccttgcagacttg
ggattggtcaaacttcagaagggcaggaaagagagttggtttatacctactaaattagcc
accaatctttcagtgagcttaacagattcatcatcaagaaaacagggatttgttgttgtg
gaaactaactttaggatgtacgcatactcatcatctaagttgcactgtgaaattttacgt
ctattcgcaagggtagagtatcaacttccaaacctcatagttggtgcaataacaaaagaa
agcctctataatgcttttgaaaatggcattactgcggggcagatagttacattccttcag
cagaacgcacatcctcgagttgctgagaaattaccatcggtacctgaaaatgtcacggat
cagataagattgtgggaaactgatttgaatagagttgagatgactccagctcatttttac
gatgaatttccttcaagggatgtctttgaggctgcttccgactttgctcgtatgcataat
ggtttactatgggaagatgctaagaaaatgcgtatggttgtcaaggcagagattcatatg
cttatgcgcgagcatcttcgtggtcaaaacaagtag
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