Gossypium raimondii: 105781746
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Entry
105781746 CDS
T04129
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
gra
Gossypium raimondii
Pathway
gra03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
105781746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gra03400
]
105781746
Enzymes [BR:
gra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
105781746
DNA repair and recombination proteins [BR:
gra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
105781746
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
105781746
NCBI-ProteinID:
XP_052482571
LinkDB
All DBs
Position
13:complement(56691373..56702388)
Genome browser
AA seq
1181 aa
AA seq
DB search
MTEEIKLSVVVSLFTWIQRSRPSAKRSKFRKFLDTFCTPSDYFSAMRLILPSLDRERGTY
GLKESVLAICLIDALGMSRDSADALRLINWRKGGANTGANAGNFALVAAEVLQRRQGTVS
GGLTIKELNELLNRLASAESRAEKTAILATLINKTNAQEMKWVIMIILKDLKLGISEKSI
FQEFHPDAEDLFNVTCDLKLVCEKLRDRTQRHKRQDIEVGKAVRPQLALRVRDPAAAWKK
LHGKEVVVECKFDGDRIQIHKNGTDIHYYSRNFLDHSEYQHGMSNIITQNILVDRCILDG
EMLVWDSTLNQFAEFGSNQEIAKAAKDGLDSDRQVLCYVAFDILYVGDTSVIHQSLKERH
ELLQKVVKPLKGRLEILVPNGGLNAHRPPGEPCWSCIAHSVNDVERFFKETIENRDEGIV
IKDLNSKWEPGDRNGKWLKLKPDYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLADRP
DPNAYPRRFISFCRVGTGLTDDDLETVAKKLKPYFRKYEYPKKMQPSFYQVTNHSKERPD
VWIESPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDRVRYDKPWHECLGVQSFVELVH
SSNGTTQKGTEQENQPDSKTKHKAHARKADKKNVSIVPSHFIRTDTSSVKGETLIFSNLM
FYFVNVPPTYSLDSFHKMVVEHGGRFSMNLNNSVTHCVAAESKGIKYQAAKLHGDIIHYS
WALDCCSQKKLIPLQPKYFLFLSESSKMKLQQEVDQYFDPYYWDLDLVDVKRLLNNIQRS
ENSKTIDYYRAKYCPNDKWSLFHGCSVYFYSSAESLKADWQVLLNLALRRLKHEILMGGG
KISENLSNATHLVVLSVPGLDVDFDSFIKSCSFEEKNLVWKKGLHVVRSQWLENCLEQGQ
KLREDQYSLKPNDFEETNFVESKLDQNLEKSKPDFNGVQNKGTCTSPESKTKQRGGKDHP
EKSISSVTPSHGNRKRRPASKNTKKGKTVVTRAQRVPRRRGKMSVKINEDGSEESGSDDK
TNEEIKKGEGYNTECYRMAGRENFEFHQNQAAEENASINWPKKAHDTVMCETNNDQPGNK
AEKFDHMELDEGNYGHEISNSEKLEVMVDPVRAMLLDMIPSLGIKHVKTTNSVVQNEKPH
MDNDADIRVVEDEKLDADFIPQPQKKKKVSYKDVAGELLKD
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgacggaagaaataaagttaagcgttgtagtgagtttattcacatggatccagaggagc
cgaccgtcggcgaagcggtctaagtttcgtaaattcctcgatacgttttgtacaccttcc
gattacttcagtgctatgcggcttatccttccttcactcgatcgagaacgtggaacttac
ggcctcaaggagtctgttctcgcaatttgcctcatcgatgctctcggcatgtcgagggat
tctgctgatgctctacgtcttatcaattggcgcaaaggtggagctaatactggtgctaat
gctggaaactttgctcttgttgctgctgaggttttgcagcgtaggcaaggtacggtttcc
gggggacttactatcaaggagttgaatgagttgcttaatcgattggcttctgctgaaagc
agggctgagaagactgcaatccttgctactttgattaataagacaaatgcacaggaaatg
aagtgggttatcatgattattctaaaagatctcaagttgggaattagtgagaagagcata
tttcaggaatttcatccagatgccgaagacttgtttaatgtcacgtgtgacctaaaattg
gtttgtgaaaagttaagggatcgtactcagcgtcataagcgtcaggacattgaggttgga
aaggctgtacgcccacaactagctttgagagttcgtgatccagctgctgcatggaaaaag
cttcatggtaaggaggtagttgttgagtgtaaatttgatggtgatcgcatccaaatccac
aaaaatggaacagacatacactactactccaggaattttcttgatcattctgaatatcag
cacgggatgtcaaatattattacacaaaatattttggttgataggtgtatacttgatgga
gaaatgttagtttgggattccactttaaatcagtttgctgagttcgggtcaaatcaggaa
atagccaaggcagcaaaagatggccttgatagtgacagacaggttttgtgctatgttgca
tttgacattctttatgttggggatacaagtgttattcaccaaagtttgaaggaacggcat
gagcttcttcaaaaagttgtgaagcctttgaagggtcgtttagagattttagtgcctaat
ggtggtctcaatgcacatcgtcctcctggggaaccttgttggtcatgtattgctcacagt
gtgaatgatgttgagagatttttcaaggaaacaattgaaaatagggatgaaggaattgta
attaaagaccttaattccaagtgggaaccaggtgatagaaatgggaagtggttgaagttg
aagcctgattacattcgggctggttctgacttggatgttctcattattggagggtattac
ggctctgggcgtcgaggaggagaggtagctcaattcttagtaggcctagcagatcgtcca
gaccccaatgcctatcccaggcgatttatatccttctgcagggttggtactgggttgact
gatgatgacttggaaactgttgcaaagaaattgaagccttattttaggaaatatgaatat
ccgaagaagatgcaaccaagtttttatcaagttactaatcactcgaaagagagacctgat
gtttggattgaaagcccagagaaatcaatcattctttctatcaccagtgatatcaggact
ataaggtctgaggtatttgctgcgccgtacagcctgagatttccacgtattgatagagtt
agatatgacaagccttggcatgagtgccttggcgtgcaatcatttgtagaactggtgcat
tcaagtaatggtaccactcaaaaagggacagaacaggaaaaccagcctgatagtaaaaca
aaacacaaggcacatgctagaaaggcagacaaaaagaatgtctccattgttccttctcat
tttattcggactgacacgtccagcgtaaagggagaaaccttaatattttcaaatcttatg
ttttactttgttaatgtgcctccgacatattctcttgattcatttcacaaaatggttgtg
gagcatgggggaaggttctcgatgaatttgaacaattcagttactcattgtgttgcagct
gaaagcaaagggatcaagtatcaggcagcaaagctgcatggggacattatccattactct
tgggccttggattgttgctcacaaaaaaagctcattcctttgcagccaaagtacttcctt
tttctttctgaatcatcaaagatgaaattacagcaagaagttgatcaatactttgaccct
tactattgggaccttgaccttgtggatgtcaaacggctcttaaacaatatccaaagatct
gaaaactccaagacaattgactattacagagcgaagtactgtccaaatgataaatggtcc
ctgtttcatggctgctctgtttacttctactcttcagctgagtctctgaaagctgattgg
caagtcttgctgaatctagcactgaggaggttaaagcatgaaattttaatgggtggtggc
aaaataagtgagaatctcagcaatgctacccatttggtagtcctctcagtaccgggattg
gatgtggactttgactcttttattaagagttgttcttttgaagagaaaaatcttgtgtgg
aaaaaggggcttcatgttgtcagatctcagtggttggaaaattgcttagagcagggacag
aagttgcgagaagaccaatatagcttgaaacccaatgattttgaagaaacaaacttcgta
gaaagcaaattggaccaaaatctggaaaaatccaagccagatttcaacggtgttcagaac
aagggtacatgtacttcacctgaaagtaaaacaaaacagagaggaggcaaagatcacccc
gaaaaatcaatttcatcggttacacctagtcacgggaacaggaagagaagacctgctagc
aagaacacaaagaaaggaaaaacagttgtaacccgagctcaaagagtaccaagacgtcgt
ggaaagatgtctgttaagattaacgaagatgggtctgaggaaagtggttctgatgacaaa
acaaatgaggagataaagaagggtgaagggtataatactgaatgctacagaatggccggt
agggaaaatttcgagtttcatcaaaatcaagcagcagaagaaaatgctagcataaactgg
cctaaaaaagctcacgataccgtgatgtgtgaaacaaataatgaccaacctggcaacaaa
gccgagaagttcgaccatatggaactagatgaagggaattacggccatgagatttcaaac
tcagaaaagctagaagttatggtcgatccggttcgcgccatgttactagacatgatccca
agccttggaataaagcatgtcaaaaccacaaattctgttgtccaaaacgagaaacctcac
atggataacgatgcagacattcgtgtcgtagaggacgagaaactagatgccgattttatt
ccacagcctcaaaagaaaaagaaagtgagttacaaggatgttgccggtgaactactcaag
gattag
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