Gossypium raimondii: 105799309
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Entry
105799309 CDS
T04129
Name
(RefSeq) general transcription factor IIH subunit 2 isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
gra
Gossypium raimondii
Pathway
gra03022
Basal transcription factors
gra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105799309
09124 Replication and repair
03420 Nucleotide excision repair
105799309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gra03021
]
105799309
03400 DNA repair and recombination proteins [BR:
gra03400
]
105799309
Transcription machinery [BR:
gra03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105799309
DNA repair and recombination proteins [BR:
gra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105799309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
Tfb4
Motif
Other DBs
NCBI-GeneID:
105799309
NCBI-ProteinID:
XP_012485244
UniProt:
A0A0D2S1Q4
LinkDB
All DBs
Position
9:35928434..35932107
Genome browser
AA seq
413 aa
AA seq
DB search
MNNGAGRRINGGAEEDDDEDDVNGDLDAWERTYTDERSWESLQEDESGMLRPIDNQALYH
SQYRRRLRSLSSTAARIQKGLIRYLYIVIDLSRAASEMDFRPSRIAVIAKHVETFIREFF
YQNPLSQVGIVTIKDGVAHCLTDIGGSPESHINALMKKLECSGDSSLQNALDLVDGYLNQ
IPSYGHREVLILYSALSTCDPGDIMDTIQKCRKSKIRCSVIGLAAEMFICKHLCQETGGT
YSVALDESHFKELILEHAPPPPAIAEFAVANLIKMGFPQRAAEGSISICSCHKEAKVGAG
YTCPRCKARACELPTECCVCGLTLVSSPHLARSYHHLFPIAPFDEVTSSHLNNPNCKLQR
NCFGCQQSLLDPGNKPGPAVVCPKCKRYFCLDCDIYIHESLHNCPGCDSLRHS
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgaataatggagcgggaagacggatcaatggtggagcggaagaggatgatgatgaagat
gacgtgaatggggatcttgatgcgtgggagagaacttacactgatgagaggtcatgggaa
tctttgcaagaggacgaatcggggatgcttcgccccattgacaaccaggccctttatcat
tcacagtatcgccggcgccttcgttccctttcgtccactgctgctcggatacaaaagggt
ctcattcgttatctatacattgttatcgatctttctcgggcagcttcagagatggatttc
cgaccaagtcgaattgctgtcattgcaaaacatgttgagactttcatccgggagttcttt
taccagaatcctcttagtcaagttggtattgtgactataaaagatggggttgctcactgc
ttaacagatattggtggtagtcccgagtctcatatcaacgctttgatgaagaagttggaa
tgttcaggtgattcctccttacagaatgcattggatcttgtagatgggtatctgaatcaa
attccatcgtatggtcatcgtgaagttctcatattatattctgctctcagtacttgtgat
cctggagatataatggacaccattcagaaatgtaggaaatctaaaataagatgttcagtt
attggcctcgctgcagaaatgtttatatgcaaacatctttgccaggaaacaggaggaacg
tactctgttgcactggatgagtcccactttaaagagctaatattggaacatgcaccacca
ccaccggccatagcggaatttgcagttgctaatttgatcaagatgggattcccacaaaga
gcagctgagggttctatatcgatttgttcatgtcataaagaagctaaggtaggtgcaggt
tacacttgtccaagatgcaaagcccgtgcatgtgagcttcctaccgaatgctgtgtctgc
gggttgacactcgtgtcttcaccccatttggctagatcatatcatcatctctttccaata
gcaccatttgacgaggtgacctcatctcatttaaacaatccaaactgcaaactgcaaaga
aattgtttcgggtgccaacaaagcctccttgatccaggaaacaaacccgggcctgccgtt
gtgtgcccgaagtgcaaacggtacttctgcctggattgtgacatttacattcatgagagt
ttgcacaattgtcccggttgtgacagcttgaggcattcctag
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