Gracilibacillus salitolerans: GI584_05550
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Entry
GI584_05550 CDS
T06279
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
grc
Gracilibacillus salitolerans
Brite
KEGG Orthology (KO) [BR:
grc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
grc03009
]
GI584_05550 (rlmD)
Enzymes [BR:
grc01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
GI584_05550 (rlmD)
Ribosome biogenesis [BR:
grc03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
GI584_05550 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Met_10
Cons_hypoth95
MTS
Methyltransf_25
PrmA
Methyltransf_15
N6_N4_Mtase
Methyltransf_4
Methyltransf_32
Saf-Nte_pilin
PCMT
Methyltr_RsmB-F
UPF0020
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
QGH33514
UniProt:
A0A5Q2TFD6
LinkDB
All DBs
Position
1125807..1127282
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AA seq
491 aa
AA seq
DB search
MNKSKQNGHKPGKKSKKKHEKKSSALTTKKGNKSQGKPSITKKRQGNKKTITAEVTCTGL
TNEGKGIVQWDGKQLEVEHLLPGETAEITLSTSGRYVNTELKRVIASSKDRIKPVCSYYY
DCGGCQLQHMNEQAQKRFKQETIDELMKPFGKPEPILTMDHPYDYRNKSHTTFGLNKERQ
IIGGLYAQNSHQLISMDRCLIHDPKADEIWQTIKDMMKSFKMQPYNEDTGRGFLRHVLVK
VGKVSGEIMVVLVVASPIFKGKNNFVKALRKAHPEITTILMNVNNRDTSMVLGGQEKVLF
GKGTITDTLCGMKFDISAKSFYQINPVQTEKLYAKAIEMAQLTGSETVIDAYCGIGTIGL
IASQKAGKVIGVELNKDAVRDAIRNSKRNGVKNARFYQGDSGEFMMEMAARGEKADVVIM
DPPRSGSDEAFLSSVVKLKPERIVYVSCNPVTQVRDMRYLVQNGYKVKGMQPVDMFPQTV
HVENVAEIVLK
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaagcaaacagaatggacataaaccgggaaaaaaatcgaaaaaaaagcatgag
aaaaagagctccgcactgacaactaaaaagggtaacaaatcccaaggcaagccttcgatt
acaaagaagcgtcaaggtaacaagaaaactataaccgcagaggtgacctgtacaggcctg
accaatgaggggaaaggcatagtccagtgggatggaaagcagctagaggtagagcatcta
ttgccaggtgaaacggctgagattactttgtccactagtgggcgatatgttaatacggaa
ttgaagcgggtaatcgcctcgtcaaaagaccggatcaagccagtatgttcgtattattat
gattgcgggggatgtcagctgcagcatatgaacgagcaggcgcaaaagcgtttcaagcag
gaaacaatagatgaattgatgaaaccattcggtaagccagaacccattttaacaatggat
catccgtatgattaccggaacaagagccatacaacatttggtctgaataaggaacggcag
attattggtgggttatacgctcagaatagtcatcagcttatctcgatggatcggtgtctc
attcacgatccgaaagcggatgagatctggcaaacgattaaggacatgatgaagtccttt
aaaatgcagccatataatgaagacactggacgaggtttcctgcgtcacgtactggtgaag
gtcggcaaggtcagtggtgagatcatggtggtgctggttgtagcttcacctatttttaaa
ggtaagaataattttgtaaaagctcttaggaaggcgcacccggagattaccaccatcctg
atgaacgtaaataaccgggatacgagcatggttctaggtggtcaggagaaagtgttgttc
ggtaaagggactataacagacaccctgtgtggaatgaagtttgatatttccgcgaaatcc
ttctatcagattaatccggtccagacggaaaagttatatgcaaaagccattgaaatggcc
cagttgactggaagtgaaaccgtaattgatgcgtactgtgggatcggtacaattggtctg
attgctagtcaaaaggctggcaaagtcattggagtagagttgaataaggatgctgttcga
gacgcaatccgcaattcaaagcgcaacggcgtgaaaaatgcccgtttctatcaaggcgat
tccggggaattcatgatggagatggcagcacgtggtgagaaagcggatgtagtaattatg
gatccaccacgaagcgggagtgatgaagcgttcttgtctagtgtcgttaagcttaagcca
gaacgtatagtttatgtgtcctgcaatccggtgacgcaggtgcgggatatgagatattta
gtacagaacggatataaggtaaaagggatgcagccagtggatatgtttccacagacggtg
catgtagaaaacgtagcggagatagtgttgaaatag
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