Gracilibacillus salitolerans: GI584_13540
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Entry
GI584_13540 CDS
T06279
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
grc
Gracilibacillus salitolerans
Pathway
grc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
grc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GI584_13540 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
grc03400
]
GI584_13540 (ligD)
Enzymes [BR:
grc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GI584_13540 (ligD)
DNA repair and recombination proteins [BR:
grc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GI584_13540 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Spt20_SEP
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QGH35000
UniProt:
A0A5Q2TMA3
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All DBs
Position
2842072..2843805
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AA seq
577 aa
AA seq
DB search
MWKPMLPTLVHEAPYGNEWIYQVKYDGFRCGLQWTDEEVKLWSRNGHDLSTSFPEIILWC
QQHTSSFQAYLPLFLDGELIISITDYRTNFEQIQSRSRMKTNIQKYSQKRPATFVAFDLL
ESKAQNLRQKSFSKRDQLLSSMLDGMTGRIRKAPTFKKLEVILKVVDFHQAEGMVAKQKK
ATYAEGKRSKSWLKVKNFRTIPGIVTNWNTENNYFTLKYYQNETLFILGKCKNGLEQQEK
ETLATFFKRYGQKVNGTTWKVDPSICMDINCLSAKDQELREPVFHQFRFDIEPTDCNQHT
IDQGLAQFPSTVSLSRLEKELFPAVSKLDYLYYLRWIAPLMLPSLKDRRLTLIRYPDGVH
EHSFYQKHLPDYAPSFIQTIPDDDKEMDILCQDLQSLIWFGNHGGLEFHVPFNKINKTDP
EEIVFDLDPPSLDQFYVAVRAARLIKEMMEHQGFTPFVKTSGRTGLQIHIPIHDMTYNET
RTLMEATAKVLVESDPEHFTIERLKKNRGNRLYIDYVQHAPGKTIIAPYSTRATDEATVA
TPLFWNEVNETLDPKKFTIHTVPTRVKEKGCPFNLII
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaaccaatgttgcccacacttgtacacgaagcgccatatgggaatgagtggata
tatcaagtgaaatatgatggatttcgctgtggtttacaatggaccgatgaggaagtcaaa
ttatggagtcgtaacggtcatgacctgagcacatcgtttcctgaaatcattttatggtgt
caacaacacacctcatcattccaagcctatttaccgctatttcttgatggtgaactgatc
atttcgatcacagactatcgaacaaactttgaacaaattcaatcacgttccagaatgaaa
acaaatatacagaaatacagtcaaaagcgtcctgctacttttgttgcctttgatctatta
gaatcaaaagctcaaaacttacgccaaaaaagcttttctaaacgtgatcaactattgtcc
tccatgttggatggtatgacggggagaattcgaaaagcgcctactttcaagaaactggaa
gtcatcctcaaagtggtcgacttccaccaggcagaaggaatggttgccaaacaaaaaaaa
gctacttatgcagaaggaaagcgcagtaaatcatggctaaaagtcaaaaatttccgaacc
attccaggaatcgttacaaattggaatacggaaaataattattttacattaaaatattat
cagaacgaaacgctttttattcttggcaaatgtaagaatggattagagcaacaagaaaaa
gaaaccttggccactttttttaaacgctatggtcagaaggtaaatggaacaacctggaag
gtagacccttcgatttgcatggatataaattgtctgagtgctaaagatcaagaacttcgc
gaaccagtatttcaccaatttcgatttgatatcgaaccgacagattgcaatcaacatacg
attgatcagggtttggcacaatttccatcaacggttagtttatcccggttagaaaaagaa
ttatttcctgctgtatcgaaactggattacttgtattatctgagatggatcgcaccttta
atgctaccaagcttaaaggatcgtagactgacattaattcgctatccggacggcgttcat
gaacattctttttatcaaaaacatctaccggattatgcgccttccttcattcaaacaatc
ccagatgacgataaagaaatggatatactctgccaagatcttcaaagtttaatctggttt
ggtaatcatggaggattggagtttcatgttccttttaataaaataaataagacagatccc
gaagaaatagtctttgatcttgatccaccgtcattagatcagttttatgttgctgtacgt
gctgctcgcttgattaaagaaatgatggagcatcagggcttcaccccttttgttaaaaca
tcaggaagaactggcttgcaaattcatatcccgattcacgatatgacctataatgagaca
agaacattgatggaagctactgcgaaagtattagtagaatctgatcctgaacattttacg
atagagcggctaaagaaaaatcgtggcaataggctttatatcgattatgtacaacacgca
cctggaaagacaatcattgctccttattccacaagagccacggatgaagcaactgtcgct
acgccattattttggaatgaagtaaatgaaacattagatccgaaaaagtttacgattcat
actgtaccaacaagggttaaagaaaaaggttgtccgtttaacttgatcatttga
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