Christiangramia fulva: C7S20_09415
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Entry
C7S20_09415 CDS
T05367
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
grs
Christiangramia fulva
Pathway
grs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
grs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C7S20_09415 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
grs03400
]
C7S20_09415 (ligD)
Enzymes [BR:
grs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C7S20_09415 (ligD)
DNA repair and recombination proteins [BR:
grs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C7S20_09415 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AVR45470
UniProt:
A0A2R3Z5C5
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All DBs
Position
2060826..2063294
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AA seq
822 aa
AA seq
DB search
MSLDEYLKKRDFQRTPEPEGAVVNQEGRLRFVIQRHQATRLHYDLRLEMQGTLKSWAVPK
GPSMNPDHKRLAIQTEDHPIQYLFFKGTIPKGNYGAGEMDIWDEGYYQGAGGISKKQLLQ
QFIKGDLKIEFFGKKIKGTFALVKTKRGGEKDNQWLLIKKKDEYATDLDYNAEDFPPGQE
IKKPTEPKVKSIQPSETIEPMLATATKEIFNDPAWIYELKWDGYRMIANMKDGKVDLYSR
NGISFNSKFSRLVRDLEQIPHNTILDGEVVVVDKKGIPDFQKLQNYDEQTLGELRYYVFD
MLFLNGLSMMDLPLLQRKSLIEEVIEDTYHTFYCEHLEGMGKTFFQRAIDAGMEGVIAKK
ADSVYTPGYRSEKWLKIKEVKSTEAIICGYTESDNAGFRSLILGLFREGQLEYIGNCGSG
FSGAKHKELLKKFKPLEISESPFEKSINLKGRSPVWVKPELVCEVKYTEWTKGGHLRHPV
FKGLRADKTLPEITGEKVIDKPEEISASASKDANSDTSEAKPGHLKINNIDVPITNLEKI
YWPDSGYSKYDLIDYYLNISEYILPYLKDRPENLHRHPDGINSQGFFQKDNEGILPEWVE
TVKIHSKSSKKEIEYLLCQNEATLLYMANLGCIEINPWNSRLEELDKPDYAVIDLDPSDK
NTFEEVIEVAQVAKEILDAAQIEAYCKTTGSSGIHIYMPLGAAYTYDEARDFTKLICYFI
KERTGDLTSMERAVKNRKGKIYLDYLQNRRGQTLAAPYCVRPKPGAPVSAPIEWDELKSG
LQILDFNLKNMPERLKEKGDLFKGVLEKQIDMEAALARINEL
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgagcttagatgaatatttaaaaaagcgcgattttcagcgtactcccgaacctgaaggt
gctgtagtaaaccaggaagggcgcttaagatttgtcattcagcggcatcaggccacacgt
cttcattacgatttacgcctggaaatgcagggcacgctcaaaagctgggctgttcctaaa
ggaccttccatgaatccagatcataaacgcctggctatccaaacggaagatcacccaatc
cagtatttattttttaaaggcaccatccccaaaggaaattacggcgcgggagaaatggat
atctgggatgaaggttattatcagggtgcaggcggaataagtaaaaaacagcttctgcag
cagttcatcaaaggagatctcaaaattgaattcttcggaaaaaaaattaaaggaactttc
gctttagtgaaaaccaaaagaggaggggaaaaagacaatcagtggttgcttataaagaag
aaagatgaatatgcgacagatctagattacaatgctgaagattttcctcccggtcaggaa
attaaaaagcccaccgagcctaaagtaaaaagcatacaaccttccgaaaccattgaacct
atgctggctaccgccactaaggagattttcaacgaccctgcctggatctatgaattgaag
tgggatggttaccgcatgatcgcgaatatgaaagacggtaaagttgacctctattcccga
aacgggatttcctttaattctaaattctcaagactggtgagggatctggaacaaattccc
cacaataccattcttgatggtgaggtagtggtagtagataaaaaaggaattcccgatttc
caaaaacttcagaattacgatgaacagaccttgggcgaacttcggtattatgtattcgat
atgctttttttgaacggtcttagtatgatggaccttccgctgttgcaaagaaaatcgctt
atcgaggaagtcattgaagatacctaccatactttttattgtgagcatctggaaggaatg
ggaaaaacttttttccaacgcgcgatcgacgccggtatggaaggagtgatcgccaaaaaa
gccgattctgtctatactcctggatatcgaagtgaaaaatggttaaaaataaaagaagta
aaaagtaccgaagctataatttgtggttataccgaatctgataatgccggatttcgctcg
ctgattttaggattatttagggaaggtcaattagaatatattggaaattgtggttctggt
ttttcgggagccaaacataaggagctattaaaaaaattcaagccacttgaaatttcggaa
agtccttttgagaaatctataaatctcaaaggaagaagtcctgtctgggtgaaaccggaa
ctggtctgcgaggtaaagtataccgagtggactaagggaggccatcttcggcaccctgta
ttcaaaggcttacgagccgataaaaccctgccggagatcacaggagaaaaagttattgat
aaacccgaagaaatttctgcttctgccagtaaggatgccaattcagatacttctgaagct
aaacccggacaccttaaaatcaacaatatcgatgttcctattacaaaccttgaaaagatc
tactggcctgattcgggttattccaaatatgatcttatagattattacctgaacatttcg
gaatatattcttccgtatttaaaagaccgtcccgaaaatcttcaccggcatcccgacgga
ataaacagccagggtttttttcaaaaagataacgaaggcattctgccggaatgggtagaa
actgtaaaaatccattctaaatcttcgaaaaaggaaattgaatatctgctttgtcaaaat
gaggcgaccctgctttatatggcgaatttgggttgtattgaaataaatccgtggaattca
cgcctggaggagctggataaaccagattatgcagtgatcgatcttgatcccagtgataaa
aatacttttgaagaggtcatagaggtggcgcaggtagcaaaagagatccttgacgccgca
caaatagaggcttattgcaaaactaccggttccagcgggatccatatttatatgccttta
ggagcggcatatacctatgatgaagccagggatttcactaaattgatctgttactttatt
aaagaaaggaccggcgatttaaccagtatggagcgggcggtaaagaatcgcaaaggaaaa
atttacctggattatttgcagaaccgtcgtggccaaacccttgctgctccttattgcgtg
aggcctaaacccggcgcgcctgtttccgcgcctatagaatgggatgaacttaaatcgggc
ctgcagattctggattttaatttaaagaacatgccggaaaggttaaaagaaaaaggagat
ctgtttaaaggcgtactggaaaaacagatagatatggaagcagccctggccaggatcaac
gagttgtaa
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