Granulicella sp. WH15: FTO74_12560
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Entry
FTO74_12560 CDS
T06415
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
grw
Granulicella sp. WH15
Pathway
grw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
grw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FTO74_12560 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
grw03400
]
FTO74_12560 (ligD)
Enzymes [BR:
grw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FTO74_12560 (ligD)
DNA repair and recombination proteins [BR:
grw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FTO74_12560 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QHN04108
UniProt:
A0A7L5A9J1
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All DBs
Position
3025265..3027940
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AA seq
891 aa
AA seq
DB search
MKTHRKQAPSDAVEEQLERYRSMRDFSITSEPSGRQKGAAPKQGQFPFVVQKHSATRLHY
DFRLGWNGVLKSWAVAKGPSYVPSERRLAVEVEDHPMAYGGFEGIIPKGQYGGGTVMIWD
QGTWEPQAGHTDVAEGLRKGSLKFVMHGKKMRGKWALVRMEGKAGGERKPNWLLIKEHDE
FEKTADDEPITEEMPNSVVTGRSLEQIAEHEDHVWDSSKTADGNAWYRQEPTNSNGAKKK
RAASPLPSLAKIPDEKLPGFMEPQLASSTATPPRGPGWLHELKLDGYRIQARKEGKKVQL
LTRNGLDWTHRMKTIAEQIAALPVELAILDGEVVVLSEDGTTSFANLQASFQEGVKHPLT
YFVFDLLHLNGHNLRPRPLKERKELLLSIVQDAGEFIRFSEHLEADGMELFHHACELHAE
GIVSKSASSAYVSGRSSSWLKSKCIHEQEFVIGGYTLLSNGGLGVGALLLGYYRDGALIY
AGRTGTGFTQKTHQALRSQLDERKQEKSPFHGQLPADARRGAIWVKPELVAQVTFATWTA
DNLVRQAAFQGIREDKPAIEVRKEDSAVSKPRATKPTKSKTPASFPAPVETALSKKNVPP
VSPITFTNPDKILDAETNLTKSKLAEYYWEIAPFILPHIANRPLSLVRCPDGTGHNCFFQ
KHGNKTVSAAVDTVSVPDKKTGKPEAYITLSTREAVAELAQMGVLEVHPWGSCNEDLEHP
DRIIFDLDPDIAISWQTLASTALEIRKQLKTLGLVSFLKTTGGKGLHVVVPIQPTREWMD
VKEFSHQFVLAMEQQNPDLYLTKMSKAARKNKIYLDYLRNERGATAVAPFSPRARSGMNV
SLPLDWSELKQDEYPVCRVADFGKWRKRLKSDPWKDFFQAQQELSFTVARQ
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgaagacacaccgaaagcaggcaccatccgatgcggttgaggaacaacttgagcgctat
cgttccatgcgcgacttctccatcacatccgagccaagcggcaggcaaaaaggtgccgct
cccaagcagggtcagttccccttcgttgttcagaaacactccgcgacgcggcttcactac
gactttcgacttggctggaacggggttctaaaaagctgggctgtcgctaaaggcccgagt
tatgtccccagcgagagacgtcttgcagtcgaggtcgaagatcatcccatggcgtacggc
ggcttcgagggcattattccaaagggccaatatggcggaggcaccgtcatgatctgggat
cagggaacctgggaaccacaggccggccacaccgacgtggctgaaggattgcgtaaggga
tcgctcaagttcgtcatgcacggcaaaaaaatgcgcggcaaatgggcactcgttcgcatg
gaaggaaaggctggcggcgaacgaaagccaaactggcttctgatcaaggaacatgatgag
ttcgagaagactgcggatgacgagcccatcactgaagagatgccgaacagcgtcgtcacc
gggcgtagcttagaacagattgccgaacatgaagaccatgtctgggactccagcaagact
gcggatggcaacgcctggtacaggcaggagccgacaaatagcaatggagcgaagaagaag
agagccgcaagcccgcttccctcgctcgcgaaaattcctgatgagaaattgcccggattc
atggagcctcaactcgcgtcttcgacggccacacctcccaggggacctggctggctgcat
gagctaaagctcgacggctaccgcatccaggctcgaaaagaaggtaagaaagttcagctc
ctgacccgcaacggtctcgactggacgcaccgcatgaagaccattgccgaacaaattgcg
gctcttccagtagaactggccatccttgatggagaggtagtcgtgctctccgaggacggc
acgacgagctttgcgaacctgcaagcttcctttcaggaaggcgtcaagcacccacttacc
tactttgtattcgacctgcttcatctcaacggacacaatcttcgcccgcggccgctgaag
gagagaaaagaactactcttgagcatcgttcaggatgcgggcgagttcatccgcttcagc
gaacacctggaggctgatggaatggagttattccatcatgcttgtgagcttcatgccgaa
ggcatcgtatcgaaatcagcgtcgtctgcctatgtctctggacgatcctcaagctggctg
aagtcgaagtgtatccacgaacaggagttcgtgatcggcggctacacactcctctcgaat
ggaggtcttggcgtgggtgcattgctgctcggctactatcgggatggcgcactgatctat
gcaggccggacaggcacaggctttacgcaaaagacccatcaggcactgcgatcgcagctc
gatgagcgcaaacaggagaagagtccctttcatggtcagctacctgccgacgcgcggcgc
ggtgcgatctgggtgaagcccgaattggtagcccaggtaaccttcgctacctggaccgcc
gataacctggttaggcaagccgcgttccaaggcattcgggaagataaacccgcaattgag
gtacggaaggaagatagtgcggtttccaaaccccgagctacaaaacccacgaagagcaaa
acgccagcatcattccctgctccagtagagacggctctatcgaagaaaaacgttcccccg
gtatcgcccattacatttaccaatccagataagattctcgacgcggaaacaaatctgacc
aaaagtaagttggcggagtactactgggagatcgctcccttcatcctgcctcacatcgcg
aaccggccgttgtccttagtgcgttgccccgatgggaccggccataactgcttctttcag
aagcatgggaacaagacagtgtcagcagcagtcgataccgtctccgttcccgataagaag
accgggaaaccagaagcctacattactctgtcaacgcgagaggccgttgcagagcttgcg
cagatgggcgttctcgaagtgcacccctggggatcgtgcaatgaagatcttgagcacccc
gatcgcatcatcttcgatttagatcctgacatcgccatctcctggcagactctcgcgtct
accgctctagagatcaggaagcagctaaagactttgggccttgtcagcttcctgaaaaca
acgggaggcaagggcctgcatgttgtagttcccatacagccgacacgcgagtggatggat
gtcaaagagttctcgcaccagtttgtactggcgatggaacaacagaatccagatctttat
ctaacaaagatgagtaaggcagcccgcaagaacaagatttatctggattatcttcgtaac
gaacgaggggcgacagcagtcgcacctttttcgccccgagcgcgatccggtatgaacgta
tctttgcccttagactggtccgaactgaaacaggatgaatatccggtctgtcgtgttgcc
gacttcggaaagtggaggaaacggcttaaatcggatccatggaaggatttcttccaggca
cagcaggaactctcttttaccgtagcgcgacaatag
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