Gryllotalpicola protaetiae: D7I44_10885
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Entry
D7I44_10885 CDS
T05660
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gry
Gryllotalpicola protaetiae
Pathway
gry03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
D7I44_10885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gry03400
]
D7I44_10885
Enzymes [BR:
gry01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
D7I44_10885
DNA repair and recombination proteins [BR:
gry03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
D7I44_10885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AYG03989
UniProt:
A0A387BSE5
LinkDB
All DBs
Position
complement(2221502..2223856)
Genome browser
AA seq
784 aa
AA seq
DB search
MQVDGHRLTLSNLDKVMYPETGTTKGDVIRYYTEVAPYLLPYASGRPVTRKRWVNGVGTA
EKPGMVFFQKDLDDSTPEWVARQIIHHKDHDNAYPLLDDVATLTWLAQIASLELHVPQWR
FTDAGERGNPDRMVLDLDPGEGVGLPECVEVAKLVRAVLDDMGLSAVPVTSGSKGIHLYA
PLDGKSTSEEVSEVAHELARSLEADHPDLVISTMKKVDRRGKVMLDWSQNNASKTTVTPY
SLRGRSRPFVAMPRTWREITSGRLRQIELHEVMGLLKKRGDAAEPLMPRGAGKLAAYRSK
RDAGKTPEPVPEGEPQPGSGRSFVIQKHAASRLHYDFRLEHDGVLVSWALPKGVPEPGEK
NHLAVHVEDHPLEYARFAGDIPKGEYGGGHVDIWDHGEYDVEKFRDDEVIAVLHGQPHGG
LGGEPVKVALIATHQGGDEKNWLIHRMELDSRKRKAPARHPSPKKSTRTYKPMLATLGSE
RSVPDDDIAVEMKWDGVRVLAYVRDGKTRLVSRNGIDITTTYPEFGSLAERTGGHDAVLD
GEVIGVDKRGIPDFGLLQQRMRLTKPADVARVAKGVPVKFMLFDVLELDGRDVTDESYDE
RRRMLEESVHSKGDILVPPAFDGTVAEGLARARELRLEGVMVKNPTAPYRPGKRSEAWIK
VKLHRTQEVVVAGWRPGNGRRAGSVGSLLLGIPAKDGLHYVGRVGTGFNDRALDELSALA
KKQARKTTPLVDVPRADASDAHWMSPTLVGEVEFAEWTRDGRLRQPSWRGLRPDKAPSDV
VRES
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggtcgacgggcatcgcctgacgctcagcaacctcgacaaggtgatgtacccggag
accgggaccacgaagggcgacgtgatcaggtactacaccgaggtcgcaccgtacctgctg
ccgtacgcgtccggccggcccgtgacccgcaagcgctgggtaaacggcgtcggcacggcc
gagaaaccgggcatggtcttcttccagaaggacctcgacgactcgacgcccgagtgggtc
gcgcggcagatcatccaccacaaggaccacgacaacgcatacccgctgctcgacgatgtc
gcgacgctcacctggctcgcgcagatcgcgtcgctcgagctgcatgtgccgcagtggaga
ttcacggatgccggcgagcgcggcaacccggaccggatggtgctcgatctggaccccggc
gagggcgtcggcctgcccgagtgcgtcgaggtcgccaagctggtgcgcgcggtgctcgac
gacatggggctgtcggctgtacccgtcacgagcggcagcaaggggatacatctctatgcg
ccgctcgacgggaagtcgacctccgaggaggtctcagaggtcgcgcacgaactggcccgc
tcgctcgaggccgatcaccccgacctcgtcatctcgaccatgaagaaggtcgacaggcgc
ggcaaggtgatgctcgactggagccagaacaacgcgtcgaagaccacggtcacgccgtac
tcgctgcgcgggcggtcacggccgttcgtcgcgatgccgcggacgtggcgggagatcacg
tcagggcggctgcgacagatcgagctgcacgaggtgatggggctgctcaagaagagaggc
gacgccgcggaacccttgatgccgcgcggcgccggcaagctcgcggcctaccgcagcaag
cgcgacgccgggaagaccccggagcccgttccggagggcgagccacagccgggctcaggg
cgctcgttcgtgatccagaagcacgccgcgagcagactgcactacgacttccgcctcgaa
cacgacggcgtgctggtgagctgggcgctgccgaagggcgtgcctgagcccggcgagaag
aaccacctcgccgtgcacgtcgaggaccacccgctcgagtacgcgaggttcgccggcgac
attccgaagggcgagtacggcggcgggcacgtcgacatctgggatcacggcgaatacgac
gtggagaagttccgcgacgacgaggtcatcgcggtgctgcacgggcagccgcacggcggt
ctcggtggcgaaccggtcaaggtcgcgctgatcgccacgcatcagggcggcgatgagaag
aactggctgatccaccggatggaactggattccagaaagaggaaagcaccggcaaggcat
ccgtcgcccaagaaatcgacgcgcacctacaagccgatgctcgcgacgctcggcagcgag
cggtcggtgcccgacgatgacatcgccgtcgagatgaagtgggacggggtgcgcgtgctc
gcgtacgtgcgcgacgggaagacgcggctcgtgagccgcaacggcatcgacatcacgacg
acataccccgagttcggctcgctcgccgagcggacgggcggtcatgacgcggtgctcgac
ggcgaggtgatcggggtcgacaagcgggggattcccgatttcgggctgctgcagcagcgc
atgcgattgacgaagccggccgacgtcgcacgggtcgcgaagggcgtaccggtgaagttc
atgctgttcgacgtgctcgaactcgatggcagggacgtcacggacgagagctacgacgag
cggcgacggatgctggaggaatccgtgcactcgaaaggcgacatcctcgtgccgcccgcg
ttcgacggcaccgtcgcggaaggcctggcgcgggcgcgcgagctgcgcctcgagggcgtc
atggtgaagaatcccaccgcgccgtaccggccgggcaagcgctcggaggcgtggatcaag
gtgaagctgcaccgcacgcaggaggtcgtcgtcgccgggtggcgccccggcaacggccgt
cgcgccggctcggtggggtcgctgctgctggggattccggcgaaggacgggctgcactac
gtgggccgcgtcggcacggggttcaacgaccgggcgctcgacgagctgtcggcgctcgcg
aagaagcaggcgcggaagacgacgccgctcgtcgacgtgcctcgggccgacgcgagcgac
gcgcactggatgtcgccgactctcgtcggcgaggtcgagttcgccgagtggacgcgggac
ggccggctgcggcagccgtcgtggcgcgggctgcgccccgacaaggcgccgtcggacgtc
gtgcgcgagtcgtag
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