Geotrypetes seraphini (Gaboon caecilian): 117347411
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Entry
117347411 CDS
T09159
Symbol
DDX6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117347411 (DDX6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117347411 (DDX6)
03036 Chromosome and associated proteins [BR:
gsh03036
]
117347411 (DDX6)
Enzymes [BR:
gsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117347411 (DDX6)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117347411 (DDX6)
mRNA degradation factors
5'-3' decay
Decapping complex
117347411 (DDX6)
Chromosome and associated proteins [BR:
gsh03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117347411 (DDX6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
Motif
Other DBs
NCBI-GeneID:
117347411
NCBI-ProteinID:
XP_033774211
UniProt:
A0A6P8PF25
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All DBs
Position
13:23723144..23815900
Genome browser
AA seq
482 aa
AA seq
DB search
MSTTRTENPVIMGLTSQNGQLRGPVKPSGGPGSGIQTQQQMNQLKNASTINNGTQQQAQS
MPTTIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSP
IQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDSIQAMVIVPTRELALQVS
QICIQVSKHMGGVKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDQIQ
MMVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLM
EELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSC
FYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHR
IGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDE
KP
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccacaagaaccgaaaaccctgttataatgggtctgactagtcagaatgggcaa
ctgcgaggccctgtgaaacccagtgggggtccaggaagtggaatacagactcagcaacag
atgaatcagctgaaaaatgccagcacaatcaataatggcactcagcagcaagcacagagt
atgcccaccacgataaaacctggcgatgactggaagaagactttaaaactccctccaaag
gatctgagaattaaaacttcagatgtgacctccacaaaaggcaatgagtttgaagattac
tgcttgaaacgggagttattaatgggaatttttgaaatgggctgggaaaaaccatctcca
attcaggaggagagtattcccatcgctttatctggtagggatatcttggctagagcaaaa
aatggaacaggcaagagtggagcctacctcattcccctacttgaacggctagatctaaag
aaagatagtatccaagcaatggtaattgttcccactcgagagcttgccctacaggtcagt
cagatctgtatccaagtaagcaagcatatgggaggagtcaaagtaatggcaacaacagga
ggaaccaacctacgggatgatataatgaggctggatgatacagtgcatgtggtgatagct
acacctggcaggattctagatctcatcaaaaaaggggtagcaaaagttgaccaaatacag
atgatggtattggatgaggcagataagttattgtctcaagattttgtgcagataatggag
gacattatactgacactacctaaaaacagacagattctgctctattctgccacttttcct
cttagtgtacagaagttcatgaattcacatttgcagaaaccctatgagattaacctgatg
gaggaactgacgttgaagggagtaactcaatactatgcttatgttactgaacgccagaaa
gtacactgcctcaatacgcttttctccaggctccagattaaccagtcaataattttctgc
aactcctctcagagggtggaactccttgctaagaaaatctcccagttgggctattcctgc
ttctatatccatgctaaaatgagacaggagcatcgtaatcgtgtctttcacgacttcaga
aatggtttatgccgcaatcttgtttgcactgatttgtttacgcgaggtattgacatccaa
gctgtgaatgtggtgatcaactttgactttccaaagctggcagagacctatcttcatcgc
attggcagatcagggcgttttggacaccttggccttgccatcaacttgatcacctatgac
gatcgattcaacctgaaaagtattgaagagcagctaggaacagaaatcaaaccaataccc
tctaacattgacaaaagcctgtatgtggcagagtaccatagtgaaccggttgaagatgag
aaaccttaa
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