Geotrypetes seraphini (Gaboon caecilian): 117347526
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Entry
117347526 CDS
T09159
Symbol
SCN4A
Name
(RefSeq) sodium channel protein type 4 subunit alpha isoform X1
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
gsh04040
]
117347526 (SCN4A)
Ion channels [BR:
gsh04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117347526 (SCN4A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
GPHH
IQ
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
117347526
NCBI-ProteinID:
XP_033774492
UniProt:
A0A6P8NF59
LinkDB
All DBs
Position
13:complement(61443249..61572339)
Genome browser
AA seq
1846 aa
AA seq
DB search
MAGRLPPPGPDHLRPFTRKSLLEIENRIAEEQAAKLKKVEGTYEKVLKPDSGLEAGKSLP
FIYGDPPSHLIGVPLQDLDPFYANKKTFIVLNRGKAIFRFSATKAIYLLDPFNLLRRVSI
KVLIHSLFSFFIMVTILANCVFMTFSNPPHWAKNVEYTFTGIYTFESLIKILARGFCLES
FTFLRDPWNWLDFSVIVMAYITEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVGALIQ
SVKKLADVMILTIFCLAVFALIGLQLFMGNLRNKCVRWPPPNSTLLEDMLVFDGDMMANF
TEYGDSSNTTGYSNYTFDKTAYLNDKANYYFLAGSNDALLCGNSSDAGKCPEGFECLKAG
RNPNYGYTSYDSFNWAFLALFRLMTQDFWENLFQLTLRAAGKTYMIFFVVVIFLGSFYLI
NLILAVVAMAYAEQNEATIQEALEKEAEFQQLLEQLKKHQEEQEKMLQQMKQSTSNSLMD
DKKKSPDWEEETEENSMDCNGQVMPRDVVDKVPSKKEPRQVNDPEKLDVKKYSTDQLDDT
QRKQSVVSVMSDAALEELEEVHQKCPPWWYKFSHKFLIWDCCTQWVKFKNVVRFVVMDPF
VDLGITICIVLNTLFMAMEHYPMTDEFNKVLNVGNLVFTGIFTAEMVFKIIALDPYYYFQ
TGWNIFDSIIVTLSLVELGLANVSGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGA
LGNLTLVLAIIVFIFAVVGMQLFGKNYKECVCKIASDCELPRWHMHDFFHSFLIVFRILC
GEWIETMWDCMEVAGQAMCLIVFMMVMVIGNLVVLNLFLALLLSSFSADNLSASDDDGEM
NNLQIAIGRITRAVDFIKTTIMKLLHRQPKGKEDQDKTDNFMLNHVDLGQDSKSEYGFID
GVFGKKEFLMDEPDHLNFIHNPNLRIQVPIASEESDLETPYEEETQSEVEVEEAKEMKKH
GNESTECSTADYRPAEAEQEVVAEENEEDEEPEECFTKACVLRCPCLQVDITQGKGKLWW
SLRKTCFKIVEHKWFETFIIFMILLSSGALAFEDVNIEQRKTIRIILEYADKVFTYVFVI
EMLLKWVAYGFKVYFTNAWCWLDFLIVDVSLISLTANLLGYSELGAIKSLRTLRALRPLR
ALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYRCVNTTTSDLF
DLSVVNNKSECLALNDTGQIRWMNVKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSRE
IEEQPQYEINLYMYIYFVIFIIFGAFFTLNLFIGVIIDNFNQQKKKFGGKDIFMTEEQKK
YYNAMKKLGSKKPQKPIPRPQNKLQGLIFDFVSKQFFDIFIMVLICLNMVTMMIETDDQS
QVKIDILYLINLVFIIFFTAECILKMIALRHHYFTIGWNIFDFVVVILSIIGLVLSDIIE
KYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSI
FGMSNFAYVKKESGIDDMFNFETFGNSIICLFQITTSAGWDGLLNPIMNSGPPDCDPHFE
NPGTSVKGNCGNPSIGIFFFCSYIIVSFLIVVNMYIAIILENFNVATEESSEPLCEDDFE
MFYETWEKFDPDATQFVEYSQMSNFVDALQEPLKIPKPNKIKLITMDLPMVIGDKIHCLD
ILFALTKNVLGDSGEMDALKATMEEKFMAANPSKVSYEPITTTLKRKQEEVCAIKIQKAF
RRYLLKRSVKHASYIYRHNHNEQVRKEEPPEKEGLIVTRLSSNLWKTGPEEITPIPDSKP
NNPPCSEKKCDEHGCDKTPDSRKARDQQCSTGRPCNNQRYTMESSV
NT seq
5541 nt
NT seq
+upstream
nt +downstream
nt
atggccggtcgcctgccgccaccgggtcctgatcacctacggccattcaccaggaaatca
ttgctcgagattgagaatcgcattgcagaggagcaagctgccaagctaaagaaagttgag
ggaacttatgagaaagtcttgaagcctgacagtggcttggaggctgggaagagccttcct
tttatctatggggatcccccttctcatttaattggcgtgccccttcaggacctggatcct
ttctatgcaaacaaaaagactttcatcgtactcaatagagggaaagccatcttccgcttt
agtgccacaaaggcaatatacctgttggatccatttaaccttctccgaagggtgtccatc
aaggtccttatccattcattattcagcttctttatcatggtaacaattttagcaaactgt
gtcttcatgacgttcagcaacccacctcattgggccaaaaatgtggagtacacctttacg
ggtatctacacattcgagtccttgattaagattctggcacgtgggttttgccttgagagt
ttcacgttcctacgtgatccgtggaactggctggattttagtgtcatagttatggcctac
atcacagagtttgtggatttgggcaacgtctccgcactccgaactttccgcgtcctgagg
gcactgaagacaatcaccgtaatcccaggcctgaagacaattgttggcgctctgattcag
tccgtgaagaagctggccgatgtgatgatcctcaccatcttctgtctcgctgttttcgca
ctcatcggcctccagctttttatggggaacctgcgcaataagtgtgtgaggtggccacca
cccaacagcacactgctggaggacatgttggtgtttgatggtgacatgatggccaacttc
actgagtacggtgacagcagcaacacaactggctacagcaattatacgttcgacaagacc
gcctacctgaatgataaagcaaattactatttcttggcgggatcgaatgatgctcttctt
tgtgggaacagcagtgatgctgggaagtgccccgaaggctttgagtgcttaaaagctggc
aggaacccaaactatggctataccagttacgactccttcaactgggccttcctggccctc
ttccgtctcatgacccaggacttctgggagaatctcttccagctgacactgcgagcggcg
ggcaagacctacatgattttctttgtggtggttattttcctgggctccttctatctcatt
aacctcatcctggctgtggtggccatggcatacgctgaacagaacgaggccactatacag
gaggccctggagaaggaggctgagtttcagcagctgcttgagcagctgaagaaacaccaa
gaggagcaggagaagatgctgcagcagatgaaacaaagcaccagcaactcgctgatggat
gataagaaaaaaagccctgactgggaagaagagactgaggaaaacagcatggattgcaat
ggacaagtcatgcctagagatgtggtagacaaagtcccctcaaagaaagaaccaaggcaa
gttaatgatcctgaaaaattagacgtgaagaaatattctacagaccagctcgatgacact
cagcggaagcaaagcgttgtaagtgtcatgtctgatgctgctttagaagaactagaagaa
gtccatcagaaatgcccaccctggtggtataaattttcccacaagtttctgatttgggac
tgctgcacacagtgggtaaagtttaagaatgtggtcagattcgtggtgatggatccattt
gttgatctgggaatcaccatctgtatcgtcctgaacacacttttcatggccatggaacac
tatcccatgactgatgagttcaacaaagtgctgaacgtaggaaacctggtcttcactggc
atcttcactgctgagatggtctttaagatcattgccctggacccttactactatttccag
actggctggaacatttttgacagcatcatcgtcactcttagtctggtggaactgggtttg
gcaaatgtatctgggctgtctgtcctccggtccttccgtttgttgagggtgttcaagctg
gccaagtcttggcccactctgaacatgctgatcaagatcattggcaactcagtgggcgcc
ctcggtaatctcaccttggtgctggccattatcgtctttatttttgccgtggtgggaatg
cagctctttggcaagaactacaaggaatgtgtgtgcaagatagcatcagactgcgagctt
ccacgatggcacatgcatgacttcttccactccttccttattgtcttccgcatcctctgc
ggagagtggattgagaccatgtgggactgtatggaggtggcaggacaagcgatgtgcctc
atcgtcttcatgatggtcatggtgattggaaatcttgtggtgctgaacctttttctcgcc
ctgctcctgagctccttcagtgccgacaacctgtctgcctctgatgatgacggggaaatg
aacaacctgcaaattgccattggtagaatcacacgagctgttgacttcattaagactacc
atcatgaaattgttacaccgacagcccaaggggaaagaggatcaggacaaaacagacaac
ttcatgctgaaccatgtggacctaggacaggactccaagtcagaatatggattcattgat
ggtgtgtttggtaaaaaggagttcctcatggatgaacctgaccacctgaattttatccac
aaccctaacttgagaatccaggttcctattgcatctgaggagtctgatctagaaaccccg
tatgaggaggaaactcagtcagaggttgaagttgaagaggccaaggaaatgaagaaacat
ggcaatgagagtactgagtgcagcacagcagactataggcctgcggaagcagagcaagaa
gtagtggctgaggagaatgaagaagatgaagagcccgaggagtgcttcacaaaagcttgt
gtgctaaggtgtccttgccttcaagttgatatcacccaagggaaggggaaactgtggtgg
agcctccggaagacgtgtttcaaaatcgttgagcacaaatggtttgagaccttcatcatc
ttcatgattctgctcagtagtggagcactggcatttgaggatgtgaacatcgagcagcgg
aaaaccattcgcatcatcctggagtatgcagacaaggtcttcacctatgtgtttgtcatt
gaaatgctcctgaaatgggtagcctatggcttcaaggtttacttcaccaatgcctggtgc
tggctggacttcttaattgtagatgtttccttgatcagtttaaccgcaaacttgttagga
tactcggagctgggtgccatcaagtctctgagaactttaagggctctgagacccctcaga
gctctctccaggttcgaaggcatgagagtggtggtcaatgcgctcctgggtgctattcct
tctatcatgaatgtgctgctggtctgtctcatcttctggctgatattcagcatcatgggt
gtgaatctctttgctgggaagttttatcggtgcgtcaacaccaccacctctgatctcttc
gacctcagtgttgttaacaataagtccgaatgcctggcattgaacgacacgggccagatc
cgttggatgaatgtgaaggtgaactttgacaatgtggggcttggatatctctctctgcta
caggtggctaccttcaaaggctggatggatatcatgtatgctgcggtggattctcgagaa
atcgaagagcagccccagtatgaaataaacctttatatgtacatctattttgtcatcttc
atcatctttggggccttcttcacgctcaaccttttcatcggcgtcatcattgacaacttt
aatcagcagaagaaaaagtttggagggaaggacatctttatgacagaagagcagaaaaag
tattataacgccatgaaaaagctaggatccaagaaacctcagaagcctatcccaagacca
cagaacaaactgcaggggcttatcttcgactttgtctcaaagcagttctttgacattttc
attatggtgctcatctgcctcaacatggtgaccatgatgattgagaccgatgaccagagc
caagtgaagatcgacatcctgtacctgatcaacctggtattcatcattttctttactgct
gagtgtatccttaaaatgatagctctaaggcaccattatttcaccatcggctggaacatc
tttgactttgtggtagtcattctctctatcatcggccttgtcttgtcagacatcatagag
aagtattttgtgtcacccaccctcttcagagtcatcaggctagcacgaattggccgtgtc
cttcgactcattagaggtgccaaaggaatccgcacgttgctctttgctctgatgatgtca
cttcctgcactgttcaatattggtcttctgcttttcctggttatgttcatctattccatt
tttggaatgtccaattttgcctatgtgaagaaggagtcagggattgatgatatgtttaac
tttgaaacatttggaaacagtatcatctgcttgttccaaattaccacctcagctgggtgg
gatggtctcctcaatcccatcatgaacagtggccctccagattgtgatccccattttgaa
aaccctggcacatctgtcaagggaaactgtgggaacccttctattggcatattcttcttc
tgcagctatatcattgtttccttcttaatcgtggtcaacatgtatattgccatcatcttg
gagaacttcaatgtagctacagaagaaagtagtgagccactgtgtgaggatgattttgaa
atgttttacgaaacctgggagaagtttgatcccgatgctacccagtttgttgaatacagc
cagatgtcaaactttgtagatgccttgcaagagccactaaaaattcccaaacctaacaaa
atcaagttgattaccatggacttaccaatggtcattggggataaaattcattgcttggac
attctctttgcactaacaaagaatgtattgggggactctggggagatggatgccctgaag
gcaactatggaggaaaagttcatggcagccaacccttccaaggtctcctatgagcctatc
actaccacactaaaacgtaagcaggaggaggtgtgcgccatcaaaattcaaaaagcgttc
cgaaggtacctgctgaagcgctctgtgaaacatgcctcttatatctaccgacataaccat
aatgaacaggttcgtaaagaggagccaccagaaaaggaagggctgattgtaaccagactc
agttccaatttgtggaaaactggaccagaagagataacaccaattccagattcaaaacca
aacaatcccccctgcagtgaaaagaaatgtgatgagcatgggtgtgataaaaccccagat
tccaggaaggcacgtgatcagcagtgcagcactggaaggccttgtaacaaccagcgctac
accatggagtcctctgtataa
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integrated database retrieval system
