Geotrypetes seraphini (Gaboon caecilian): 117347781
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Entry
117347781 CDS
T09159
Symbol
SOX13
Name
(RefSeq) transcription factor SOX-13 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gsh03000
]
117347781 (SOX13)
Transcription factors [BR:
gsh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
117347781 (SOX13)
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
117347781
NCBI-ProteinID:
XP_033775036
UniProt:
A0A6P8NGM9
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Position
13:2247363..2283727
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AA seq
624 aa
AA seq
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MEKQLVTDVDEAVLSRSQRMSLRSSLSPHLERDSTCDLVKCAIKTEEEMESSVCESPWEA
AAGDPYFANSQTALQLVRDPAESSSPTQATGSPSGAALPDCQGLAFEPVRQENLELNRNL
KEVLPTLEKLLSSDWKERLLGSGSSDSRDVKGTQESLAEKELQLLVMINQLSNLRDQLLT
AHSEQKNMATMLFEKQQQQMELARQQQEQIAKQQQQLIQQQHKINLLQQQIQQVNMPYVM
IPAFPPSHQTLSVPSDPQIGLPIQPIPCKPVDYPMQLLHSPPSAVKRPSGSGHLQMQESS
QPLNLTAKPKSSQVPTSTSSCSGKLSSCSPSAPTSGASRDRPASSQRSNLPLGFLGEGDA
VTKAIQEAQQLLHSQNGTAEAPALSCYRKDLRTSESPQAKERMGEVSPHGPDDSLLEMDG
SRHFPESRASSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMSNVEKQ
PYYEEQARLSRLHLEKYPDYKYKPRPKRTCIVEGKRLRVGEYKALMKNRRQDTRQTYVIP
PPEQMQPQTSSTTYSQRMGLALTSARMEHGHPGDCDPSMPVIINTRSLKSEDGDGADTDQ
YHYSGDEDSEGEEKSDGELVVLTD
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggagaagcagctggttacagatgtggatgaggcggttctctccaggagccagcggatg
tcattgaggagttcattgtctccccatctggagcgggacagcacatgtgacttggtgaag
tgtgctattaaaactgaggaggagatggagagcagtgtttgtgaatctccgtgggaagca
gcagccggtgatccttacttcgccaactcacaaacagcgcttcagctcgtgagagaccct
gcagagtccagctctccaacacaggcaactggctccccatcgggtgctgctcttccggat
tgtcaaggactggcctttgaacctgtccgccaagaaaacctggagctgaatagaaacctg
aaagaagtcctgccgaccctggagaagctgctttcaagtgactggaaggagaggcttctg
ggaagtggcagctctgatagcagggatgtaaaagggacacaggaaagccttgcagagaag
gagctacagctgctggttatgattaaccagctgtccaacctgcgggaccagctgctgacc
gcacactctgagcagaagaacatggccaccatgctcttcgagaagcaacagcagcaaatg
gagttggccagacagcagcaagagcagattgccaaacagcagcagcagctgattcagcaa
caacacaagatcaacctcctgcaacagcagatccagcaggtaaacatgccatatgtgatg
atccctgccttccctcccagccatcagacactttctgtgccctctgatcctcagattgga
cttcccattcagccaattccctgcaaaccggtggattatcccatgcagctgcttcacagc
cctccttcagcggtgaagagaccctctggatcaggacatctccaaatgcaggaaagttcg
caaccattaaacttaacagcaaaacccaaaagctctcaggtccccacatcaaccagttcc
tgcagcggaaagctgagctcctgcagcccttcggccccaaccagtggagcaagcagagac
cgtccagcaagttcccaaaggtcaaatctacctttaggatttctgggggaaggagatgct
gttaccaaagcaattcaagaagctcaacagctcctgcacagccagaatgggacagcagag
gctcctgcactgagctgctacaggaaggatctgcgtacgtcagagtcgcctcaagcaaag
gagcgaatgggggaggtgtcgccacatgggcctgatgattccttgttggaaatggatggt
tctcggcacttcccagagtcccgggccagtagccacattaagcgtcctatgaatgcgttc
atggtgtgggccaaggatgagcgacggaaaatcctgcaagcctttcctgatatgcacaac
tccagcatcagcaagatcctgggctcccgctggaagtccatgagtaatgtggaaaaacag
ccatattacgaggaacaggcacgtctcagccgactgcacctggagaagtatcccgattat
aagtacaaaccgcgaccgaaacgcacctgcattgtggagggcaagcgcctgcgtgttgga
gaatacaaagcactgatgaaaaatcgccgtcaggacacccgccagacctacgtcataccg
cctcctgagcagatgcagccacagaccagctccactacctattctcaacgcatgggcctt
gcgctgacctcggctcggatggagcatggccaccctggagactgtgaccccagtatgccc
gtcatcatcaacacacggagccttaagtcagaagatggagatggggcagacactgaccag
taccactacagtggggatgaggactctgagggggaggagaagagtgatggggagctcgtg
gtcctcactgactga
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