Geotrypetes seraphini (Gaboon caecilian): 117348250
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Entry
117348250 CDS
T09159
Symbol
KDM2A
Name
(RefSeq) lysine-specific demethylase 2A isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
117348250 (KDM2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gsh03000
]
117348250 (KDM2A)
04121 Ubiquitin system [BR:
gsh04121
]
117348250 (KDM2A)
03036 Chromosome and associated proteins [BR:
gsh03036
]
117348250 (KDM2A)
Enzymes [BR:
gsh01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
117348250 (KDM2A)
Transcription factors [BR:
gsh03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
117348250 (KDM2A)
Ubiquitin system [BR:
gsh04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
117348250 (KDM2A)
Chromosome and associated proteins [BR:
gsh03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
117348250 (KDM2A)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
117348250 (KDM2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
JmjC
Cupin_8
LRR_4
CCD97-like_C
QueC
eIF-3c_N
MAM33
Motif
Other DBs
NCBI-GeneID:
117348250
NCBI-ProteinID:
XP_033776005
UniProt:
A0A6P8PMV6
LinkDB
All DBs
Position
14:60193775..60336148
Genome browser
AA seq
1297 aa
AA seq
DB search
MEQEEETIRYSRRLRGIMRRRYEDDGISDDEIEGKRTFDLEEKLYSSKYNADFITLMQGK
DFNMEYIQRSGLRDPLIFTSADGLGIKMPDPNFSVNDVKMFVGSRRIVDVMDVSTQKGIE
MSMSQWAKYYETPEEERDKLYNVISLEFSHTKLENLVQRPATVDLIDWVDNIWPRHLKDR
QTESTNAIHGMQYPKVQKYCLMSVRGCYTDFHVDFGGTSVWYHILRGGKVFWLIPPTTHN
LEMYENWLLSGKQGDIFLGDRVAECQRIELQQGYTFVIPSGWIHAVFTPVDTLVFGGNFL
HSFNIPMQLRIYSIEDRTRVPNKFRYPFYYEMCWYVLERYVYCMTNRSHLTKEYQRESLS
IDLELNKAEYRKNVEDDSGEEEEEEEEEDEEEDDDDDDEDYEETCKRSRSRRCLFSNPMS
NGAHRYEMPRSYHSAPLLHPPSLKRTPSIEFSESGGSYHSHVDIDLFNQHSGLRKEVPIT
YLTRFELEGLGSLVDKLESLPLHKKCVPTGIEDEDALLADVKKLLEEHANDPPKLALTGV
PIVQWPKRDKYKVQWRPKIRTPIIPITKPHTMRPAPKQHPPVKSSTPQVVSGVRRRRVRC
RKCTACTQRECGVCHYCKDMKKFGGPGRMKQSCVLRQCLAPRLPHSVICALCGDAENDET
QDFQKKLMECSLCNEIVHPGCLQMDGAGLLNEELPNCWECPKCYQDDNSDKVSRPTQQGL
SPALPRVKLQPKMVCTTAAAVKQRKENLHRAHRVKMAKLRLEALPRRKYLQYPVLQKYRV
HAGSGMEQHTHKKIKMEEERMLLQTKRKMEESEEEHVQAKVLRPLRSREEPLVCPPQSPT
CRLQLIHDPGSPPPSARSGATRSSPGAGPSHIPSGNRDERFKRRQLLRIQAGDLGMQLAQ
EKENNPSGKELSDIERAKIRGNYLTVTLQRAPKDFQSTSIVPKLQAITESSSNLRQAPRV
VNRHSTHKTPTHDRTEEEEDGDDEEEEEEEDEDDDDDSTEECISNGSRIHGRSRTASCRE
QDGEDFVLQRDVWMSVFRYLSRKELCECMRVCKTWYKWCCDKRLWTKIDLSRCKSVVPQA
LSGIIKRQPISLDLSWTNISKKQLTWLVNRLPGLKDLILAGCSWSAVSALSTSSCPLLRT
LDLRWAVGIKDPQIRDLLTPSTEKPGHDNRSKLRNMTDFRLAGLDITDATLRLIIRHMPL
LSRLDLSHCCHLTDQSVNLLTAVGSSTRNSLTELNLAGCNKLTDQCLLYLRRIANVNLID
LRGCKQITRGACEQFISDLSINSLYCLSDEKLLQKIS
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atggaacaggaggaggagactattcgttacagccgcagattgcgtggcattatgcggcga
cgatatgaagatgatggtatttcggatgatgagattgaaggcaagagaacttttgactta
gaagagaaactctacagtagcaaatacaatgcagacttcatcaccctcatgcagggcaaa
gattttaatatggaatatattcagcgaagtggcctcagggatcctctcatctttactagc
gccgatggacttggaataaagatgccagatcctaacttcagtgtgaatgatgtcaagatg
tttgtggggagccgacgaattgtagatgtgatggatgtgagtacacagaagggcattgag
atgtctatgtctcagtgggctaaatattatgaaaccccagaggaggaacgggacaagctg
tacaatgttatcagcctggaatttagccacacaaagctggagaatctggtacaaaggccg
gcaacggtagatcttattgactgggtagacaacatctggccaaggcacctgaaggacagg
cagactgagtctactaatgccatccatggcatgcagtatccaaaagtgcaaaagtattgc
ctgatgagtgtcaggggctgctacacggatttccatgtggactttggtggcacatcagtg
tggtatcatatccttcgtggtgggaaggtattttggctgatccctccaaccacgcacaat
ctggagatgtatgaaaactggttgctgtcaggcaagcaaggtgacatttttttgggtgac
cgggtagcagagtgccaacgcattgagctgcagcaaggatatacttttgtcattccttca
gggtggattcacgcagtattcacccctgtagatactctagtatttggaggaaacttcctg
cacagcttcaacatccccatgcaactacgcatttacagcattgaagacaggacacgggtt
ccaaacaagtttcgttatccattttactatgaaatgtgctggtatgtcttggagcgttat
gtgtactgcatgaccaaccgctcccacctcaccaaggaataccagagggagtctttgagc
atagatttggagttaaacaaagcagagtacagaaaaaatgttgaagatgacagtggggag
gaggaggaggaggaggaggaggaggatgaggaggaggatgacgatgatgatgatgaagat
tatgaagagacttgcaaacgttcacgtagtcggcgttgtcttttcagcaaccctatgtcc
aatggagcccaccgttatgagatgccacggagctatcactctgcgccacttctacatccc
ccaagcctaaaacgcactccatctatagagttctcagagtctggaggttcctaccatagc
catgtggacatagatctctttaatcaacacagtggacttcgcaaggaggtgcccatcact
tacctaacacgttttgaactagagggactgggcagccttgtggacaagctagagtcattg
ccattacacaagaaatgtgttccaacagggattgaggatgaagacgctctgctggcagat
gttaagaaattactggaggagcatgccaatgatcctccgaagctagctctcactggggtc
cctattgtgcagtggccgaagagggataagtataaagtccagtggcgcccaaagattcgg
actccaatcatccctatcacaaaaccacataccatgagaccagccccaaaacagcatcct
cctgttaagtcaagcaccccacaggtggtgtctggggtacgaaggcgaagggtgcgttgc
cggaaatgcactgcttgcacacaacgggaatgtggagtctgccactattgcaaggacatg
aagaagtttggaggaccaggtcgcatgaagcaatcatgtgtactcaggcagtgcctagcg
ccaagactgcctcactctgtaatatgtgcactctgtggagatgcagaaaatgatgagacc
caagactttcagaagaaactgatggagtgctctctctgcaatgaaattgttcatcctggc
tgcctacagatggatggagcaggactgctgaatgaagagttgcccaactgctgggagtgt
ccgaagtgttaccaggatgacaattctgacaaagtatcgaggcccacccagcaaggtttg
agccctgctctcccacgagtaaagcttcagcccaaaatggtatgcaccacagcagctgcc
gtcaagcagcgaaaagagaacctacaccgggcacacagagtgaagatggcaaagctcagg
ttggaggcactacccaggaggaagtacttgcagtacccagtgttgcagaagtacagggtc
catgctggcagtggcatggaacagcacacccataaaaagataaagatggaagaagagaga
atgctcttgcagacgaaacgaaaaatggaagaaagtgaggaagaacacgtacaagccaaa
gtgctacgccccttgcggagcagagaggagcccctggtatgcccaccccagtcacccaca
tgtcgtctgcagctgatccatgaccctgggtctcctcctccatctgcacgcagtggggcc
acacgttcttcccctggggcaggaccaagccatattccctctggaaatcgtgatgagcgc
ttcaaacgtcgccaactgctgcgcatccaggcaggtgacctaggaatgcagttggcacaa
gagaaggagaataaccccagtggtaaagagctgtctgacatagaacgggccaagattcgt
ggcaattacttgacagtaaccttgcagcgggcccccaaggactttcagagtacttctatt
gttcccaaactgcaggccatcacagagtcctcctccaatctccgccaggcaccacgtgtt
gttaaccgtcactccactcacaaaacaccaacccatgataggactgaagaggaagaagat
ggtgatgatgaagaggaggaagaggaggaggatgaagatgatgatgacgacagcacagaa
gagtgtatcagcaatggctcccgcatacatgggcgcagtagaacagcaagttgtcgtgag
caggatggagaggattttgtcttgcagagggatgtctggatgtctgtatttcgttatctt
agtcgaaaggaactctgtgaatgtatgagggtttgcaaaacctggtacaagtggtgttgt
gataaaagactttggacaaagattgacttgagtcgatgtaagtctgttgtgcctcaagca
ctcagtggcatcattaagagacaaccaatcagcctggacctcagctggacaaatatttct
aagaagcaactcacatggctggtaaatagactcccaggtttaaaagatctcattttagcc
ggctgttcatggtcagctgtctctgcacttagcacttccagttgcccccttctcaggaca
cttgatctgcggtgggcagttggcatcaaggatccacaaattcgggatttattaacacct
tcaacagaaaaaccaggtcatgacaatcgcagcaaacttcggaatatgacagacttccgg
ctggcaggactggatatcacagatgccacgcttcgattgattatccgccatatgcccctc
ttgtcccgactagacctcagtcactgctgtcaccttactgaccagtctgtcaatcttctc
actgctgttggatcctccacacgaaactccctcacagagttaaatctggctggatgcaat
aagctcacagaccaatgtttgctgtacctacgacggattgctaatgtgaatctgattgac
ttgcgtggttgcaaacaaatcacaagaggagcatgtgaacagttcatctcggacctgtct
atcaacagcctatactgcctgtcagatgagaaactcctacagaaaattagctaa
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integrated database retrieval system
