Geotrypetes seraphini (Gaboon caecilian): 117352237
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Entry
117352237 CDS
T09159
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03022
Basal transcription factors
gsh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117352237
09124 Replication and repair
03420 Nucleotide excision repair
117352237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsh03021
]
117352237
03400 DNA repair and recombination proteins [BR:
gsh03400
]
117352237
Transcription machinery [BR:
gsh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
117352237
DNA repair and recombination proteins [BR:
gsh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
117352237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
HscB_4_cys
Matrix
Motif
Other DBs
NCBI-GeneID:
117352237
NCBI-ProteinID:
XP_033784487
UniProt:
A0A6P8P5L6
LinkDB
All DBs
Position
1:21796550..21864000
Genome browser
AA seq
395 aa
AA seq
DB search
MDEEPERAKRWEGGYERTWEVLKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
LYVVVDGSRTMEDQDLKPNRLTCTLKLLELFVEEYFDQNPISQIGIIVTKGKRAEKLSEL
AGNPKKHVTALKKSVDMSCLGEPSLYNSLNLAMQTLKHMPGHTSREVLVIFSSLTTCDPA
NIYDLIKCLKAVKIRVSVIGLSAEVRVCTVLTRETGGTYHVILDESHYKELLMYHISPPP
TSSSSECSLIRMGFPQHTVASLSDQDAKPSFSMAHLDGNNEPGLTLGGYFCPQCRAKYSE
LPVECKICRLTLVSAPHLARSYHHLFPLDAFQEVPLEEYQGERICQGCQGELKEQLVYIC
TLCHNVFCVECDLFVHDSLHCCPGCIHKSPVSAGV
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaacctgagagagccaagcgctgggagggaggttatgaacgtacatgggaa
gtcctcaaggaagatgaatcgggatcactcaaagctactatagaagacattttatttaag
gccaagagaaaaagggtctttgaacaccatgggcaagttcgtctaggaatgatgcgtcac
ctttatgtggtagttgatggatcaaggaccatggaagatcaggatttaaaacccaaccga
cttacatgtacattaaagttattggaactctttgttgaagagtactttgatcagaatcca
attagccagattggtataattgttaccaaaggcaaaagggcagaaaagctgagtgaactt
gcaggaaaccccaaaaaacacgtgactgctctgaagaaatctgttgatatgagctgtctt
ggggagccttcactgtacaactctttaaacttggctatgcagactctcaagcacatgcca
ggacacacaagtcgagaagtattggtcatttttagcagtcttacaacatgtgacccagcg
aacatctatgacttaattaagtgcctgaaagctgttaaaatcagagtgtctgtaattggt
ctatctgctgaagtgcgggtctgcactgtgctcacgcgagagactggagggacatatcat
gttattttagatgaaagccattacaaagagctgctaatgtaccacattagtccaccccct
accagttcaagctcagagtgctctctcatacgaatgggctttccacaacatactgttgca
tctctttctgatcaggatgctaaaccatcattcagcatggcgcatttggatggcaataat
gagccaggtcttacattgggaggatatttttgtccacagtgtagagcaaaatactcagaa
cttcctgtggaatgcaaaatctgccgccttaccttagtgtctgcacctcatttggcacgg
tcttaccatcacctctttcccttggatgcctttcaggaggttcctctggaggagtaccaa
ggagaacggatttgtcagggctgccagggagagctgaaagaacaacttgtttatatttgc
acattatgccataatgtgttctgcgtagaatgtgacttatttgtccatgattccctgcat
tgttgccctggatgtattcacaaaagtcctgtgtctgcaggtgtgtga
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