Geotrypetes seraphini (Gaboon caecilian): 117355416
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Entry
117355416 CDS
T09159
Symbol
THOC1
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03013
Nucleocytoplasmic transport
gsh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117355416 (THOC1)
09122 Translation
03013 Nucleocytoplasmic transport
117355416 (THOC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117355416 (THOC1)
03041 Spliceosome [BR:
gsh03041
]
117355416 (THOC1)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
117355416 (THOC1)
Spliceosome [BR:
gsh03041
]
Complex C
Other components
EJC/TREX
117355416 (THOC1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117355416 (THOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
117355416
NCBI-ProteinID:
XP_033789825
UniProt:
A0A6P8Q408
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Position
2:complement(143452201..143697776)
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AA seq
656 aa
AA seq
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MSPPLFNFPEARSRFTSSIRDALNNKTIRPLLATFNQLSGSENEKKCTLDQAFRGVLEDE
IIIHASSESFLAIISLAINGVTEGICTASTPFVLLGDVLDCLPLDNCDRIFTFVEKNVTT
WKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFN
LENVTVFNTSEHESTLGQKHIEDKDEGMEGIEEGEMGDDETPTNCSIPIDYNLYRKFWSL
QDYFRNPVQCYDKSAWKTFLKYSDEVLAVFKSYKLDDTQASRKKLDELKAGGEHVYFAKF
LTSEKLMDLQLSDCNFRRHILLQYLILFQYLKGQVKFKSSNYVLLDEQSLWIEDTTKLVH
QLLCETPPVGDRFSKMIEHILNTEENWNAWKNEGCPSFVKERPMDSKPTRVVRKRPAPED
FLGKGNNKKIIMGNDELTRLWNLCPDNMDACKAENREYMPTLEEFFEEAIEQAVPENMVE
SEYKVVNNSNYGWRALRLLARRSPHFFQPTNQQFRSLPEYLENMVIKLAKELPPPSEEIK
TGEDDEEDNDALLKENSESPDVRHQKPVTGEQIESFANKLGEHWKILAPYLEMKDFDIRE
IESDSEDVHMRAKLLLVAWQDREGPNATPDNLIVALNNARLSDLAESLTNDTENNS
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcctccgctcttcaattttcccgaagcgcggagtcgcttcacgagctccattaga
gatgctttgaataacaaaactatcagacctttattggcaacattcaaccaactgtccgga
agtgaaaatgaaaaaaagtgtaccctggaccaagcctttcgaggagttctggaggatgaa
attataatccatgcatcctctgagagcttcttagccatcatttctcttgctataaatgga
gtcacagaaggtatctgcacagcatccaccccttttgtgctccttggagatgtccttgat
tgcctccctcttgataactgtgacagaattttcactttcgtggagaaaaatgttacaact
tggaagtctaatacattttattcagctgggaagaactacttactgagaatgtgtaatgat
ctcctgagaagattgtcgaaatcacagaatacagtgttttgtggaagaattcaactgttc
cttgctcgattatttccactgtctgagaaatcaggtctgaatttgcagtctcagtttaac
ctggaaaatgtcactgttttcaataccagtgagcatgagagcacactggggcaaaagcat
atagaagacaaagatgaaggaatggaagggatagaagaaggtgaaatgggagatgatgaa
actcctacaaactgctccattcctatagactacaacctgtacagaaagttctggtcactc
caggattacttccggaatcctgtgcaatgctatgacaagagtgcctggaaaacatttctc
aagtattctgatgaggttttggctgtgtttaaaagctacaagctggatgatacacaggct
tccaggaagaagttggatgagctgaaggcaggaggagagcatgtgtatttcgccaagttc
ctcactagtgaaaagctcatggatttgcagctaagtgactgtaactttcgccgccacatc
ctactgcagtatctgatattgttccaatatctaaaggggcaagtcaagttcaaaagttcc
aactacgttcttcttgatgaacagtctctctggattgaggacactacaaaactagtccat
cagctgctttgtgaaaccccaccagttggagacagattttccaaaatgatagagcacata
ttgaacactgaagaaaactggaatgcatggaaaaatgaaggctgtccaagttttgtgaaa
gaaaggcctatggactccaaacctacaagagttgtaaggaagcgaccagctcctgaggat
ttcctgggtaaaggaaacaacaagaaaattatcatgggaaatgatgaattgacacgactc
tggaatctgtgccctgacaatatggatgcatgtaaagcagagaacagggagtatatgccc
accctggaagagttctttgaagaggctattgagcaggctgttcctgaaaacatggttgaa
agtgaatacaaggtggtgaataattcaaattatggctggcgagcactgagactcttagca
cgcagaagtccccacttctttcagccaactaatcagcaattccgaagtttgccagaatat
ctagaaaatatggtcatcaagttggccaaagagttgcctcctccttctgaagagatcaag
actggtgaagatgatgaggaagacaatgatgctttgttaaaggagaacagtgaaagccca
gatgtacggcaccaaaaacctgtgactggggagcagattgaatcatttgcaaataaattg
ggggagcactggaaaattctagccccttatttggagatgaaggacttcgacattcgagag
attgagtcagacagcgaagatgtacatatgagggccaaactgctgctcgttgcctggcag
gaccgggaggggccaaatgcaaccccagacaaccttattgttgccttgaataatgctcga
ttaagtgatcttgcagaaagcttgacaaatgacacagaaaataatagttaa
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